View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18782_high_2 (Length: 495)

Name: NF18782_high_2
Description: NF18782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18782_high_2
NF18782_high_2
[»] chr1 (13 HSPs)
chr1 (30-402)||(15192448-15192813)
chr1 (126-382)||(15212644-15212895)
chr1 (314-474)||(15201848-15202006)
chr1 (378-474)||(15192814-15192910)
chr1 (305-474)||(15212739-15212908)
chr1 (306-454)||(15192635-15192786)
chr1 (232-375)||(15201848-15201986)
chr1 (50-104)||(15212560-15212614)
chr1 (224-306)||(15212819-15212901)
chr1 (299-375)||(15192813-15192890)
chr1 (384-467)||(15192635-15192717)
chr1 (224-306)||(15192820-15192903)
chr1 (262-306)||(15201955-15201999)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 402
Target Start/End: Original strand, 15192448 - 15192813
Alignment:
Q  30 atggcaatgttcatataaagaatgtcaatggcttaagccataattaatttggatttgtaagaatcaaactcgaaactcgaaactccttggtcaatgtctg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  15192448 atggcaatgttcatataaagaatgtcaatggcttaagccataattaatttggatttgtaagaatcaaac-------tcgaaactccttggtcaatgtctg 15192540  T
Q  130 ctagaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtccattttgttc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15192541 ctagaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtccattttgttc 15192640  T
Q  230 tagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttctctc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15192641 tagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttctctc 15192740  T
Q  330 gcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacatt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15192741 gcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacatt 15192813  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 126 - 382
Target Start/End: Original strand, 15212644 - 15212895
Alignment:
Q  126 tctgctagaaatgctaatcatcattattagccttggtcaaactagttggtgttcatatgctaataagggaattattgctgcatatggcggtgtccatttt 225  Q
    ||||||| ||||||||||  ||||||| |||||| ||||||||||  |  ||||||  || ||||||||||||||||||||||||||| ||||||   ||    
T  15212644 tctgctataaatgctaattgtcattatcagcctttgtcaaactagccgacgttcat--gccaataagggaattattgctgcatatggcagtgtcccgctt 15212741  T
Q  226 gttctagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttc 325  Q
    ||||||||||||| |||||| | |||||||| ||| ||||||| || |||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  15212742 gttctagatttaatgttctctttcaggacacgggttttcattatcattaaatgctatgaaatccttgagaatat---ttcttgttctagatttaatgttc 15212838  T
Q  326 tctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattctt 382  Q
    |||||||||  || ||||||||||||||||||||||| ||||||| |||||| ||||    
T  15212839 tctcgcaggtcacaggcgttcattaccattaaatgctttgaaatccttgataatctt 15212895  T

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Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 314 - 474
Target Start/End: Original strand, 15201848 - 15202006
Alignment:
Q  314 gatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattcttcttgttctagatttaacattctctcgcagga 413  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  || ||    
T  15201848 gatttaatgttctctcgcaggacacgggtgttcattaccattaaatgctatgaattctttgatattcttcttgttctagatttaacattctct--caaga 15201945  T
Q  414 caccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg 474  Q
    ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15201946 cacggacatttcattaccattaaatgctttgaaatccttgaaaatctttcttctgatgatg 15202006  T

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Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 15192814 - 15192910
Alignment:
Q  378 ttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15192814 ttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg 15192910  T

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Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 305 - 474
Target Start/End: Original strand, 15212739 - 15212908
Alignment:
Q  305 cttgttctagatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgatattctt-cttgttctagatttaacattc 403  Q
    ||||||||||||||||||||||||  ||||| |||||  ||||||| ||||||||||||||||||| |||| | | || ||||||||||||||||  |||    
T  15212739 cttgttctagatttaatgttctctttcaggacacgggttttcattatcattaaatgctatgaaatccttgagaatatttcttgttctagatttaatgttc 15212838  T
Q  404 tctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttctgatgatg 474  Q
    ||||||||| ||| ||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  15212839 tctcgcaggtcacaggcgtt-cattaccattaaatgctttgaaatccttgataatctttcttctaatgatg 15212908  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 306 - 454
Target Start/End: Original strand, 15192635 - 15192786
Alignment:
Q  306 ttgttctagatttaatgttctctcgcaggagacgggcgttcattaccattaaatgctatgaaatctttgata----ttcttcttgttctagatttaacat 401  Q
    ||||||||||||||| ||||||  |||||| || || ||||||||||| |||||||||||||||| |||| |    |||||||||||||||||||||  |    
T  15192635 ttgttctagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgt 15192734  T
Q  402 tctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttga 454  Q
    |||||||||||| || |||  ||||||||||||||||||| ||||||| ||||    
T  15192735 tctctcgcaggagacgggc-gttcattaccattaaatgctatgaaatctttga 15192786  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 375
Target Start/End: Original strand, 15201848 - 15201986
Alignment:
Q  232 gatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttcttgttctagatttaatgttctctcgc 331  Q
    ||||||| ||||||  ||||||||| |||||||||||||| ||||||||||||| || |||| |    |||||||||||||||||||||  ||||||  |    
T  15201848 gatttaatgttctctcgcaggacacgggtgttcattaccattaaatgctatgaattctttgata----ttcttcttgttctagatttaacattctct--c 15201941  T
Q  332 aggagacgggc-gttcattaccattaaatgctatgaaatctttga 375  Q
    | || |||| |  ||||||||||||||||||| ||||||| ||||    
T  15201942 aagacacggacatttcattaccattaaatgctttgaaatccttga 15201986  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 15212560 - 15212614
Alignment:
Q  50 aatgtcaatggcttaagccataattaatttggatttgtaagaatcaaactcgaaa 104  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  15212560 aatgtcaatggcttaagccataattaatttggatgtggaagaaccaaactcgaaa 15212614  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 15212819 - 15212901
Alignment:
Q  224 ttgttctagatttaacgttctcctgcaggacactggtgttcattaccaataaatgctatgaaatccttgagaatatttcttct 306  Q
    ||||||||||||||| ||||||  ||||| ||| || ||||||||||| |||||||| |||||||||||| ||| ||||||||    
T  15212819 ttgttctagatttaatgttctctcgcaggtcacaggcgttcattaccattaaatgctttgaaatccttgataatctttcttct 15212901  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 15192813 - 15192890
Alignment:
Q  299 tttcttcttgttctagatttaatgttctctcgcaggagacgggc-gttcattaccattaaatgctatgaaatctttga 375  Q
    ||||||||||||||||||||||  ||||||||||||| || |||  ||||||||||||||||||| ||||||| ||||    
T  15192813 tttcttcttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttga 15192890  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 467
Target Start/End: Original strand, 15192635 - 15192717
Alignment:
Q  384 ttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttct 467  Q
    |||||||||||||||| |||||  ||||||||| ||  || |||||||| |||||||| |||||||||||||||| ||||||||    
T  15192635 ttgttctagatttaacgttctcctgcaggacactggtgtt-cattaccaataaatgctatgaaatccttgagaatatttcttct 15192717  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 15192820 - 15192903
Alignment:
Q  224 ttgttctagatttaacgttctcctgcaggacactggtgtt-cattaccaataaatgctatgaaatccttgagaatatttcttct 306  Q
    |||||||||||||||| |||||  ||||||||| ||  || |||||||| |||||||| |||||||||||||||| ||||||||    
T  15192820 ttgttctagatttaacattctctcgcaggacaccggcatttcattaccattaaatgctttgaaatccttgagaatctttcttct 15192903  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 15201955 - 15201999
Alignment:
Q  262 ttcattaccaataaatgctatgaaatccttgagaatatttcttct 306  Q
    |||||||||| |||||||| |||||||||||| ||| ||||||||    
T  15201955 ttcattaccattaaatgctttgaaatccttgaaaatctttcttct 15201999  T

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