View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18782_high_6 (Length: 368)
Name: NF18782_high_6
Description: NF18782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18782_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 56 - 352
Target Start/End: Complemental strand, 36795536 - 36795242
Alignment:
| Q |
56 |
aatacatgtctactcacattgtattcttactaatctaaaattattgagtttctacttacggttatcatgtgttcatagaaggaaatttgaaaccagaata |
155 |
Q |
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| T |
36795536 |
aatacatatctacttacattgcattcttactaatctaaaattattgagtttctacttaaggtaatcatgtgttcatagaaggaaatttgaaaccagaatg |
36795437 |
T |
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| Q |
156 |
ggttgtttgattagagaggaataaatatgggaagcgatgaatgagaagtatggttcttctacctcttatcccatccaccattggaatctctcatatgctt |
255 |
Q |
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| T |
36795436 |
ggttgtttgattagataggaataaatatgggaagcgatgaatgagaagtatggttcttctacctcttatcccatccaccattggaatctctc--atgctt |
36795339 |
T |
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| Q |
256 |
tcatttaaacaaacacgttcttaactcttaagaatttccccaccaaattaccttagcttatgtcattgcacttaacggcttccatgatgatgtccat |
352 |
Q |
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| T |
36795338 |
tcatttaaacaaacacgttcttaactcttaagaatttccccaccaaattaccttagcttatgtcattgcacttaacggcttccatgttgatatccat |
36795242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 36795624 - 36795585
Alignment:
| Q |
22 |
acatcatcaagatgcgaagtgcaatactctctagaataca |
61 |
Q |
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| T |
36795624 |
acatcatcaagatgcgaagtgcaatactctctagaataca |
36795585 |
T |
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