View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18783_high_11 (Length: 320)
Name: NF18783_high_11
Description: NF18783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18783_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 52384178 - 52383889
Alignment:
| Q |
16 |
ataattaagtgtactagttttcaagatagaatttattatgtggacacgaccatggttatcaaatcaaaattctattagtcattaggaatgacttattttt |
115 |
Q |
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| T |
52384178 |
ataattaagtgtactagttttcaagatagaatttattatgtggacacgaccatggttatcaaatcaaaattctattagtcatcaggaaagacttattttt |
52384079 |
T |
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| Q |
116 |
caaattgtgaatcgtaagatacattaccaataagttgctgagataaacaaatgacaaaagaaaagtagttggttatattgtcgtacaaatttgaac-nnn |
214 |
Q |
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| T |
52384078 |
caaattgtgaatcgtaagatacattaccaataagttgctgagataaacaaatgacaaaagaaaagtagttggttatattgtcctacaaatttgaacaaaa |
52383979 |
T |
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| Q |
215 |
nnnngtgatcgactgctttaagtctagatagttgttggtcagaatagatcataatgaatcagaattcaaaatgagattcatgtcgaaaat |
304 |
Q |
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| T |
52383978 |
aaaagtgatcgactgctttaagtctagatagttgttggtcagaatagatcataatgaatcagaattcaaaatgagattcatgtcgaaaat |
52383889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 25093449 - 25093409
Alignment:
| Q |
258 |
atagatcataatgaatcagaattcaaaatgagattcatgtc |
298 |
Q |
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| T |
25093449 |
atagatcataatgaatcaacattcaagatgagattcatgtc |
25093409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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