View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18783_high_19 (Length: 246)
Name: NF18783_high_19
Description: NF18783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18783_high_19 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9459 - 9231
Alignment:
| Q |
1 |
ttaccttgtttgagtatttgagaagaagatgtgaggttgtttatgtgaagaatctcatcggtgtttttgttgaagaggtttgagattagtgaaattgttt |
100 |
Q |
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| T |
9459 |
ttaccttgtttgagtatttgagaagaagatgtgaggttgtttatgtgaagaatctcatcggtgtttttgttgaagaggtttgagatttgtgaaattgttt |
9360 |
T |
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| Q |
101 |
ggaaattttgatttgctctatatactaagaatgttttgcatgtgtcatgtgttgaattgcaagtgtaccttgtacctggtgatgtttcatttgaataaca |
200 |
Q |
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| T |
9359 |
ggaaattttgatttgctctatataccaagaatgttttgcatgtgtcatgtgttgaattgcaagtgtaccttgtacctggtgatgtttcatttgaataaca |
9260 |
T |
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| Q |
201 |
attagaactgtcgtaaggttgttgagaat |
229 |
Q |
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| T |
9259 |
attagaactgtcgtaaggttgttgagaat |
9231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21541653 - 21541881
Alignment:
| Q |
1 |
ttaccttgtttgagtatttgagaagaagatgtgaggttgtttatgtgaagaatctcatcggtgtttttgttgaagaggtttgagattagtgaaattgttt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |
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| T |
21541653 |
ttaccttgtttgagtatttgtgaagaagatgtgaggttgtttatgtgaagaatctcattggtgtttttgttgaagaggtttgagatttgtgaaatggttt |
21541752 |
T |
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| Q |
101 |
ggaaattttgatttgctctatatactaagaatgttttgcatgtgtcatgtgttgaattgcaagtgtaccttgtacctggtgatgtttcatttgaataaca |
200 |
Q |
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| T |
21541753 |
ggaaattttgatttgctctatatactaagaatgttttgcatgtgtcatgtgttgaattgcaagtgtaccttgaacctggtgatgtttcatttgaataaca |
21541852 |
T |
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| Q |
201 |
attagaactgtcgtaaggttgttgagaat |
229 |
Q |
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| T |
21541853 |
attagaactgtcgtaaggttgttgagaat |
21541881 |
T |
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