View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18783_high_2 (Length: 880)
Name: NF18783_high_2
Description: NF18783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18783_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 672; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 672; E-Value: 0
Query Start/End: Original strand, 18 - 796
Target Start/End: Original strand, 6364941 - 6365731
Alignment:
| Q |
18 |
ccaatgttggcaaggaggtaataacacttttcagatacgttttctctccgactttgcctttaccggtttttcctatacaaaaattggactctcaatttca |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6364941 |
ccaatgttggcaaggaggtaataacacttgccagatacgttttctctcccactttgccttttccggtttttcctatacaaaaattggactctcaatttca |
6365040 |
T |
|
| Q |
118 |
ctgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgttttttacagctcaaatgttctttatacctactacat--------- |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365041 |
ctgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgttttttacagctcaaatgttctttatacctactacataatttctca |
6365140 |
T |
|
| Q |
209 |
----ccacttgcccttaattatatcaaattgaaaactaaattttaatattttagtggtaattgatagtaactggttatttatgaataatatttgggtatt |
304 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365141 |
acatccacttgcccttaattatatcaaattgaaa-ctaaattttaatattttagtggtaattgatagtaactggttatttatgaataatatttgggtatt |
6365239 |
T |
|
| Q |
305 |
gttaaaataagataaagaagttgttaccatcagcaacggtagcactaatcagccagagagccacagaacggcggaacaaggcggtggcagtgtcaagtac |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
6365240 |
gttaaaataagataaagaagttgttaccatcagcaacggtagcactaatcagccagagagccacagaacggcggaacaaggaggtggcagtgtcagctac |
6365339 |
T |
|
| Q |
405 |
agtaccggcaacatcaccagcaaaatcgaagataccgccaaatgcaccaccggcgctttgagctgcagtcagttcgttgatgtctaagacattcttttgc |
504 |
Q |
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|||||||||| |||||||| |||||||||||| || | ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6365340 |
agtaccggcagcatcaccaacaaaatcgaagaaactgtcaactacaccaccggcgctttgagctgcagtgagttcgttgatgtctaagacattcttttgc |
6365439 |
T |
|
| Q |
505 |
atcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaatgcttaaatgtattacactatctttggta |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365440 |
atcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaatgcttaaatgtattacactatctttggta |
6365539 |
T |
|
| Q |
605 |
aatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgataggtgcaaggttagttcaaaagaaataattgtttattgtt |
704 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6365540 |
aatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgataggtgcaaggttagttcaaaagaaataattgtttattgtt |
6365639 |
T |
|
| Q |
705 |
cattattatatgttttttacataattaatttactaaataacaacacgtttaaatgaagatgggtaatataagctggctcattacataaataa |
796 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6365640 |
cattattatatgttttttacataattaatttactaaataacaacacatttaaatgaagatgggtaatataagctggcacattacataaataa |
6365731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 494 - 663
Target Start/End: Original strand, 7463096 - 7463269
Alignment:
| Q |
494 |
cattcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa---tgctt-aaatgtatt |
589 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||| |||| ||||||| | ||||| |||| |||| |
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| T |
7463096 |
cattcttttgcatcaacaccacagttcccttcaacttttggcctctatcaaagagaccagttacccctgaaaacatctttgaatatgctttaaatatatt |
7463195 |
T |
|
| Q |
590 |
acactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttga |
663 |
Q |
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| T |
7463196 |
acactatatttggtaaatgaaagaaatgcctgtgtcttgtaaccatgggggtgcttagtatctatagtagttga |
7463269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 495 - 664
Target Start/End: Original strand, 6355996 - 6356169
Alignment:
| Q |
495 |
attcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa---tgctt-aaatgtatta |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | || ||| ||||||| | ||||| |||||||||| |
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| T |
6355996 |
attcttttgcatcaacaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtatta |
6356095 |
T |
|
| Q |
591 |
cactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgat |
664 |
Q |
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|||||| | |||||||||||||||| |||||||| |||| |||| ||| || ||||||||||||||||||||| |
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| T |
6356096 |
cactatatatggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgat |
6356169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 558 - 664
Target Start/End: Original strand, 6393072 - 6393178
Alignment:
| Q |
558 |
caatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagt |
657 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |||| |||||||||| ||||||||| | |
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| T |
6393072 |
caatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccatggggatgcttggtatttatact |
6393171 |
T |
|
| Q |
658 |
agttgat |
664 |
Q |
| |
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| T |
6393172 |
acttgat |
6393178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 558 - 664
Target Start/End: Original strand, 6412212 - 6412319
Alignment:
| Q |
558 |
caatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttaccaag-gggatgcttagtatttatag |
656 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||| |||| ||| | |||||||||||||||||||| |
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| T |
6412212 |
caatgaagtcatctttgatgcttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccttgtgggatgcttagtatttatag |
6412311 |
T |
|
| Q |
657 |
tagttgat |
664 |
Q |
| |
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|| ||||| |
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| T |
6412312 |
tacttgat |
6412319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 559 - 664
Target Start/End: Original strand, 6373157 - 6373263
Alignment:
| Q |
559 |
aatgaactcatctttaatgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgttttgttacca-aggggatgcttagtatttatagt |
657 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||| |||| |||| ||||||||||| |||||||||| |
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| T |
6373157 |
aatgaagtcatctttgatgcttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattggggatgcttactatttatagt |
6373256 |
T |
|
| Q |
658 |
agttgat |
664 |
Q |
| |
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| ||||| |
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| T |
6373257 |
acttgat |
6373263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 460 - 534
Target Start/End: Original strand, 6340050 - 6340124
Alignment:
| Q |
460 |
ctttgagctgcagtcagttcgttgatgtctaagacattcttttgcatcaacaccacagttcccttcaccttttgg |
534 |
Q |
| |
|
|||||||||||||| | ||||||||| || || |||||||| |||||||| | ||| || ||||||||||||||| |
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|
| T |
6340050 |
ctttgagctgcagtgatttcgttgatatccaatacattcttatgcatcaatatcactgtccccttcaccttttgg |
6340124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 624
Target Start/End: Original strand, 6373607 - 6373656
Alignment:
| Q |
575 |
atgcttaaatgtattacactatctttggtaaatgaaagaaaagcttgtgt |
624 |
Q |
| |
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||||||||| |||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
6373607 |
atgcttaaacgtattacaatatctttggctaatgaaagaaaagcttgtgt |
6373656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 524
Target Start/End: Original strand, 6426635 - 6426672
Alignment:
| Q |
487 |
tctaagacattcttttgcatcaacaccacagttccctt |
524 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
6426635 |
tctaacacattcttttgcatcaacaccacagttccctt |
6426672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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