View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18783_high_4 (Length: 536)
Name: NF18783_high_4
Description: NF18783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18783_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 43349205 - 43348689
Alignment:
| Q |
1 |
aacttgcatgaatcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattctatactactaattatatat |
100 |
Q |
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| T |
43349205 |
aacttgcatgaatcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattctatactactaattatatat |
43349106 |
T |
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| Q |
101 |
aattaacaagacaattttcttcttctaaaataaaagaaagcatgaataagcacgcttacccaaaagccaatagcatgatcaccaacataatgatagaatt |
200 |
Q |
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| T |
43349105 |
aattaacaagacaattttcttcttataaaataaaagaaaacatgaataagcactcttacccaaaagccaatagcatgatcaccaacataatgatagaatt |
43349006 |
T |
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| Q |
201 |
agagtattcttcttcttggtttaccatgagaattgttgatggaaaaaagtttctttaaaaccttcaacatcaccaacatactaggcttgttcttggtttg |
300 |
Q |
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| T |
43349005 |
agagtattcttcttcttggtttaccatgagaattgttgatggaaaaaagtttctttaaaaccttcaacatcaccaacatactaggcttgttcttggtttg |
43348906 |
T |
|
| Q |
301 |
aataagagcattgttggtattatcaattgttaaggatctatactcaaccacatcctcattgaaaacctcccacaataaatccattggaacctcttcatct |
400 |
Q |
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| T |
43348905 |
aataagagcattgttggtattatcaattgttaaggatctatactcaaccacatcctcattgaaaacctcccacaataaatccattggaacctcttcatct |
43348806 |
T |
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| Q |
401 |
tctaattcttttcttgttttctttccattttgtatagatgaaaagctattcctttgaccctttaagaccaaattttcttcatagcaatctttttgatctc |
500 |
Q |
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| T |
43348805 |
tctaattcttttcttgttttctttccattttgtatagatgaaaagctattcctttgaccctttaagaccaaattttcttcatagcaatctttttgatctc |
43348706 |
T |
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| Q |
501 |
ttaggagttgttggtag |
517 |
Q |
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| T |
43348705 |
ttaggagttgttggtag |
43348689 |
T |
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