View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18783_low_12 (Length: 318)
Name: NF18783_low_12
Description: NF18783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18783_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 40045925 - 40045626
Alignment:
| Q |
1 |
agttcataaatcacaattaaccaaaccactcaccagccaataattgtccacaaaactcaatataaaacaacataatccatgtctctaaaattcatcaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40045925 |
agttcataaatcacaattaaccaaaccactcaccagccaataattgtccacaaaactcaatataaaacaacataatccatgtctctaaaattcatcaacc |
40045826 |
T |
|
| Q |
101 |
cttcactcattttacaagcacaattcaatcatttcaatatagcccaaaatgatgacaaataaaaaacaatgcatctcactaaccctactagtcatttccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40045825 |
cttcactcattttacaagcacaattcaatcatttcaatatagcccaaaatgttgacaaataaaaaacaatgcatctcactaaccctactagtcatttccc |
40045726 |
T |
|
| Q |
201 |
tcttttgttccaacactttagcagcattatctcctgccacgtcaccaattcaatctccccctacccaaccaatttcatccccaacaaaacccttagtccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40045725 |
tcttttgttccaacactttagcagcattatctcctgccacgtcaccaattcaatctccccctacccaaccaatttcatccccaacaaaacccttagtccc |
40045626 |
T |
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