View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18783_low_3 (Length: 569)
Name: NF18783_low_3
Description: NF18783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18783_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 43383699 - 43383301
Alignment:
| Q |
18 |
cttccagtagtagaattagaagaagcggttattgttgt------attggcgaaacagcccttgacattcttgtgactagccctatgtcctccaagtgcct |
111 |
Q |
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| T |
43383699 |
cttccagtagtagaattagaagaagcggttattgttgttgttgtattggcgaaacagcccttgacattcttgtgactagccctgtgtcctccaagtgcct |
43383600 |
T |
|
| Q |
112 |
gatgggatccaaatactttgttacaacatgaacacacaaactgatcattctcatcgaccatcaccgttgttgttgattttgct---gctttcttgttctt |
208 |
Q |
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| T |
43383599 |
gatgggatccaaatactttgttacaacacgaacacacaaactgatcatcctcatcgacca---ccgttgttgttgcttttgcttttgctttcttgttctt |
43383503 |
T |
|
| Q |
209 |
tggatttgaattagcaagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaattaggaggagggttaatg |
308 |
Q |
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| T |
43383502 |
tggatttgaattagaaagtaagagcaaagaagcagcaccttcctgttcttctggagtcacaacaagttgttgtcttctgaaattaggtggagggttaatg |
43383403 |
T |
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| Q |
309 |
cctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgt |
408 |
Q |
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| T |
43383402 |
cctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgt |
43383303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 59 - 409
Target Start/End: Complemental strand, 25870382 - 25870023
Alignment:
| Q |
59 |
ggcgaaacagcccttgacattcttgtgactagccctatgtcctccaagtgcctgatgggatccaaatactttgttacaacatgaacacacaaactgatca |
158 |
Q |
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| T |
25870382 |
ggcgaaacagcccttgacattcttgtgactagccctgtgtcctccaagtgcctgatgggatccaaatactttgttgcaacacgaacacacaaactgatc- |
25870284 |
T |
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| Q |
159 |
ttctcatcgaccatcaccgttgttgttgattt--------tgctgct-ttcttgttctttggatttgaattagcaagtaagagcaaagaagcagcacctt |
249 |
Q |
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| T |
25870283 |
--ctcatcatccaccaccgttgttgttgttttcttgttcttgttcttgttcttgttctttggatttgaattagcaagtaaaagcaaagaagcagcacctt |
25870186 |
T |
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| Q |
250 |
cctgttcttctggagtcacaa---caagttgttgtcttctgaaattaggaggagggttaatgcctctccattcacgctcaggatgacaacgcatatgacc |
346 |
Q |
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| T |
25870185 |
cctgttcttctggagtcacaagttgttgttgttgtcttctgaaattaggaggagggttaatgcctctccattgacgctcaggatgacaacgcatatgacc |
25870086 |
T |
|
| Q |
347 |
aaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgtt |
409 |
Q |
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| T |
25870085 |
aaaaagagccttccatgaccagaatatcttaccacattcagtgcaagtacgagcaatgttgtt |
25870023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 438 - 556
Target Start/End: Complemental strand, 43383282 - 43383170
Alignment:
| Q |
438 |
tccccacccaattccttacgcttcttcttaccagtaacattaacagaatcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
537 |
Q |
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| T |
43383282 |
tccccacccaattccttactcttcttcttaccagtaacagta------tcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
43383189 |
T |
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| Q |
538 |
tatctccacctttcatctc |
556 |
Q |
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| T |
43383188 |
tatctccacctttcatctc |
43383170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 519 - 556
Target Start/End: Complemental strand, 25869970 - 25869933
Alignment:
| Q |
519 |
tgatcatcggaccaatttttatctccacctttcatctc |
556 |
Q |
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| T |
25869970 |
tgatcatcggaccaatttttatctccacctttcatctc |
25869933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 466
Target Start/End: Complemental strand, 25870009 - 25869981
Alignment:
| Q |
438 |
tccccacccaattccttacgcttcttctt |
466 |
Q |
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| T |
25870009 |
tccccacccaattccttacgcttcttctt |
25869981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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