View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18783_low_7 (Length: 426)
Name: NF18783_low_7
Description: NF18783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18783_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 37215674 - 37216081
Alignment:
| Q |
18 |
aaatgttcaagcaacttacataaaatggataaatcaaaagtttnnnnnnnnnnnnnnntattatgatcattttagaagtttcaataatgattttctgcat |
117 |
Q |
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| T |
37215674 |
aaatgttcaagcaacttacataaaatggataaatcaaaagtt-aaaaaaaaataaaaatattatgatcattttagaagtttcaataatgattttctgcat |
37215772 |
T |
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| Q |
118 |
tgagttaaacattaacataccatgagttgcctctttgatgaaaaccttcaatcttaacaccatgtttggttgaggtgagaactccacctccatattccct |
217 |
Q |
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| T |
37215773 |
tgagttaaacattaacataccatgagttgcctctttgatgaaaaccttcaatcttaacaccatgtttggttgaggtgagaactccacctccatattccct |
37215872 |
T |
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| Q |
218 |
tccagctgctgtttcactttctgattcccacatactgaaaaacaaaccaaactcacagtaatgtgttatatgttaggctaaatatagaaggtttaagtga |
317 |
Q |
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| T |
37215873 |
tccagctgctgtttcactttcagattcccacatactgaaaaacaaaccaaactcacagtaatgtgttatatgttaggctaaatatagaaggtttaagtga |
37215972 |
T |
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| Q |
318 |
gaatgagtataaaggtaaataacaaaatgatatctttattgatggagatgagtactgagtaggaacccacacaaggtgtttgcctctttggacttatctc |
417 |
Q |
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| T |
37215973 |
gagtgagtataaaggtaaataacaaaatgatatctttattgatggagatgagtactgagtaggaacccacactaggtgtttgcctctttggacttatctc |
37216072 |
T |
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| Q |
418 |
caaattgtc |
426 |
Q |
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| T |
37216073 |
caaattgtc |
37216081 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 1883550 - 1883468
Alignment:
| Q |
131 |
aacataccatgagttgcctctttgatgaaaaccttcaatcttaacaccatgtttggttgaggtgagaactccacctccatatt |
213 |
Q |
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| T |
1883550 |
aacataccaagagtgacctctttgaagaaatccttcagtcttgacaccatgtttgtttgaagtgagaattccatctccatatt |
1883468 |
T |
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