View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18783_low_8 (Length: 404)
Name: NF18783_low_8
Description: NF18783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18783_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 13167365 - 13167620
Alignment:
| Q |
21 |
catcagaatattaaacccacttacacgtctctctcctttgaaaattgtatgttctcaagttaaaccactcacatggtcaaattgttaaccatcatggcaa |
120 |
Q |
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| T |
13167365 |
catcaaaatattagaccc-cttgcacgtctctctcctttgaaaattgtatgttctcaaactaaaacactcacatggtcaaatagttaaccatcatggcaa |
13167463 |
T |
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| Q |
121 |
tttctatcatacgttctcatgcaccttatgattaaattgttgtttgctctcattattaagtgtctacctaatttcttgatcttcatgtgtctgcaaaact |
220 |
Q |
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| T |
13167464 |
tttctatcacatgttctcatccaccttatgagtaaattgttgttcgctctcactattaattgcctacctaatgtcttgatattca--tgtctacaaaact |
13167561 |
T |
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| Q |
221 |
tagtttaaaattcattgtttttctataccttggttcccaatcctattctattttaataaac |
281 |
Q |
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| T |
13167562 |
tagcttgaaatccattg--tttctatactttggttccccatcctattctattttaataaac |
13167620 |
T |
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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 46405142 - 46405058
Alignment:
| Q |
1 |
tcctttccagtctcctatatcatcagaatattaaacccacttacacgtctctctcctttgaaaattgtatgttctcaagttaaac |
85 |
Q |
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| T |
46405142 |
tcctttccagtctcctatatcatcagaatattaaacccatttacacgtctctctcctttgaaaattgtatgctctcaagttaaac |
46405058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 28497985 - 28497860
Alignment:
| Q |
22 |
atcagaatattaaacccacttacacgtctctctcctttgaaaattgtatgttctcaagttaaaccactcacatggtcaaattgttaaccatcatggcaat |
121 |
Q |
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| T |
28497985 |
atcagaacagtaaacctccttgcacatctctctcctttgaaatttgtatgttctcaggttaaaccactcacatggttaaatcgttaaccctcatggtaat |
28497886 |
T |
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| Q |
122 |
ttctatcatacgttctcatgcacctt |
147 |
Q |
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| T |
28497885 |
ttctatctcacgttctcatgcacctt |
28497860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 29116019 - 29115951
Alignment:
| Q |
250 |
ttggttcccaatcctattctattttaataaaccgtagcttgttgctcaattttaattctacaaagccat |
318 |
Q |
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| T |
29116019 |
ttggttccaaatcctgttctattttaataaaccataacttgttactcaattttaattctacaaaaccat |
29115951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 9880023 - 9880060
Alignment:
| Q |
243 |
ctataccttggttcccaatcctattctattttaataaa |
280 |
Q |
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|||||| |||||||||||||||||||| |||||||||| |
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| T |
9880023 |
ctatactttggttcccaatcctattctgttttaataaa |
9880060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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