View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18784_high_10 (Length: 268)
Name: NF18784_high_10
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18784_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 19697011 - 19696817
Alignment:
| Q |
56 |
ccaaacataaaatggaataatacaatttgtaaaaattacaggaacaaaatcataaacaaattcagataaattatttaatcacataattaacaaaagaagg |
155 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19697011 |
ccaaacataaaatggaataatacaatttcaaaaaattacaggaacaaaatcataaacaaattcagataaattatttaatcacataattaacaaaagaagg |
19696912 |
T |
|
| Q |
156 |
ctaacaacaaaattttacatgaaagtcctttgt-agaaccaatgaaccctacatgtgtaatccttttagtcaccttctgctacaaccttcgatcc |
249 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
19696911 |
ctaacaacaaaattttacatgaaaatcctttgtaagaaccaatgaaccctacatccgtaatccttttattcaccttctgctacagccttcgatcc |
19696817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 4354127 - 4353995
Alignment:
| Q |
106 |
cataaacaaattcagataaattatttaatcacataattaacaaaagaaggctaacaacaaaattttacatgaaagtcctttgtagaaccaatgaacccta |
205 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| ||| |||| || | ||||| |||| |||||||||| ||||| | ||||||| ||||||| |
|
|
| T |
4354127 |
cataaacaaattcagataaattatttactgacataaataagaaaaaaaagttaacatcaaatccttacatgaaaatccttagggtaaccaataaacccta |
4354028 |
T |
|
| Q |
206 |
catgtgtaatccttttagtcaccttctgctaca |
238 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||| |
|
|
| T |
4354027 |
catctgtaatctttttagtcaccttctgctaca |
4353995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 45223285 - 45223420
Alignment:
| Q |
106 |
cataaacaaattcagataaattatttaatcacataattaacaaaagaa---ggctaacaacaaaattttacatgaaagtcctttgtagaaccaatgaacc |
202 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| ||| |||| | || ||||| |||| | |||||||| ||||||| |||||||| |||| |
|
|
| T |
45223285 |
cataaacaaattcagataaattatttactgacataaataagaaaaaataagggttaacatcaaatcctaacatgaaaatcctttgaggaaccaataaacc |
45223384 |
T |
|
| Q |
203 |
ctacatgtgtaatccttttagtcaccttctgctaca |
238 |
Q |
| |
|
|||||| ||| ||| ||||||| | ||||||||||| |
|
|
| T |
45223385 |
ctacatctgtgatcattttagttatcttctgctaca |
45223420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University