View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18784_high_11 (Length: 251)
Name: NF18784_high_11
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18784_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 11906480 - 11906651
Alignment:
| Q |
1 |
tacattaatcaagtaaattaattttttaaatttgatgcttgagctatacacatctaagcatgtaagaagaataaaggatcataagtatcactatcaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11906480 |
tacattaatcaagtaaattaattttttaaatttgatgcttgagctatacacatctaagcatgtaagaagaataaaggatcataagtatcactatcaccat |
11906579 |
T |
|
| Q |
101 |
tattcatatatattattcccaaaatttgagcttaattgcatcatacatttaactgtgtaacattagataaca |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
11906580 |
tattcatatatattattcccaaaatttgagcttaattgcatcatagatttaactgtgtaacattaggtaaca |
11906651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 11906681 - 11906721
Alignment:
| Q |
202 |
caataaaagttgaaaatggtgtattttaatcctagaattat |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11906681 |
caataaaagttgaaaatggtgtattttaatcctagaattat |
11906721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University