View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18784_high_5 (Length: 355)
Name: NF18784_high_5
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18784_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 48676306 - 48675980
Alignment:
| Q |
13 |
tgaagtagttgattatcagtaaagttaaataggaccctctctttgatgataggataagatgttagctttagctactgtttaagataagtgtggtgttttt |
112 |
Q |
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| T |
48676306 |
tgaagtagttgattatcagtaaagttaaataggaccctctctttgatgataggataagatgttagatttagctactgtttaagataagtgtggtgttttt |
48676207 |
T |
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| Q |
113 |
gtacttgctaatcgttttcaaggaagggacaatcactaatggtcgacaaaatttaatttaactagaaaatgttcaaagcttttgagtttgatttttgtaa |
212 |
Q |
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| T |
48676206 |
gtacttgctaatcgttttcaaggaagggacaatcactaatggtcgacaaaatttaatttaactagaaaatgttcaaagcttttgagtttgatttttgtaa |
48676107 |
T |
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| Q |
213 |
agagaagacatgtgctattgatgtgaaattcaagtacaagtggagccttaagtcaagcaatgcaagaatacacgtggatccagttacaatattaatctct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48676106 |
agagaagacatgtgctattgatgtgaaattcaagtacaagtggagccttaagtcaagcaatgcaagaatacacgtggatccacttacaatattaatctct |
48676007 |
T |
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| Q |
313 |
tgccatgtaggattttatcttcaatct |
339 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48676006 |
tgccatgtaggattttatcttcaatct |
48675980 |
T |
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