View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18784_high_6 (Length: 351)
Name: NF18784_high_6
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18784_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 30719661 - 30719976
Alignment:
| Q |
18 |
aagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719661 |
aagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccgg |
30719760 |
T |
|
| Q |
118 |
taatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaat |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
30719761 |
taatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttgagtccatgattttgaat |
30719860 |
T |
|
| Q |
218 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30719861 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaac |
30719960 |
T |
|
| Q |
318 |
ttcccagtactcaact |
333 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30719961 |
ttcccagtactcaact |
30719976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 30881698 - 30881383
Alignment:
| Q |
18 |
aagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881698 |
aagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccgg |
30881599 |
T |
|
| Q |
118 |
taatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaat |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
30881598 |
taatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttgagtccatgattttgaat |
30881499 |
T |
|
| Q |
218 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881498 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaac |
30881399 |
T |
|
| Q |
318 |
ttcccagtactcaact |
333 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30881398 |
ttcccagtactcaact |
30881383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 44731097 - 44731412
Alignment:
| Q |
18 |
aagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccgg |
117 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
44731097 |
aagtcagatccactagcatcaatggcaacagaaataggttgatttgcgacagctttttgcaatgcctgctcattgttggcagggacatcttcatacccgg |
44731196 |
T |
|
| Q |
118 |
taatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaat |
217 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| ||| |||||||| | ||||| ||||||||||| |
|
|
| T |
44731197 |
taatggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtactaagtccgtgattttgaat |
44731296 |
T |
|
| Q |
218 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaac |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44731297 |
gatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaac |
44731396 |
T |
|
| Q |
318 |
ttcccagtactcaact |
333 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
44731397 |
tttccagtactcaact |
44731412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 27 - 333
Target Start/End: Complemental strand, 30892772 - 30892466
Alignment:
| Q |
27 |
ccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaa |
126 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||| | ||||||||| || |||||||||||||| || | ||| ||| |
|
|
| T |
30892772 |
ccactcgcatcaatggctacggaaattggttgattagccactgctttttgcagtgcattctcattgtttgccgggacatcttcatatccagcaatagtag |
30892673 |
T |
|
| Q |
127 |
ctgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaattt |
226 |
Q |
| |
|
| ||| || | || | || |||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30892672 |
cagcaggggttgaagtttcatttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttgaatgatgaattt |
30892573 |
T |
|
| Q |
227 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30892572 |
gaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagta |
30892473 |
T |
|
| Q |
327 |
ctcaact |
333 |
Q |
| |
|
||||||| |
|
|
| T |
30892472 |
ctcaact |
30892466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 16867484 - 16867804
Alignment:
| Q |
18 |
aagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccgg |
117 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
16867484 |
aagtcggaaccactagcatcaatggctacggaaatcggttgattagccactgctttttgtagtgcctgctcattgttggtcgggacatcttcatacccag |
16867583 |
T |
|
| Q |
118 |
taatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaat |
217 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| || | ||||| || || ||||||||||||||||| |
|
|
| T |
16867584 |
taatggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtatttagtccatgattttgaat |
16867683 |
T |
|
| Q |
218 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaac |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| |||||||||| |||| |
|
|
| T |
16867684 |
gatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtcacagtcaacgagttcttgttctgataaagagatcaac |
16867783 |
T |
|
| Q |
318 |
ttcccagtactcaactgatga |
338 |
Q |
| |
|
|| ||||||||||||| |||| |
|
|
| T |
16867784 |
tttccagtactcaacttatga |
16867804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 8899313 - 8898993
Alignment:
| Q |
18 |
aagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccgg |
117 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
8899313 |
aagtcagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcaggaacatcttcatacccgg |
8899214 |
T |
|
| Q |
118 |
taatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaat |
217 |
Q |
| |
|
|||| ||| ||| || |||||||||||||||||| | || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899213 |
taatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttgagtccatgattttgaat |
8899114 |
T |
|
| Q |
218 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8899113 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttctgataaagagaccaac |
8899014 |
T |
|
| Q |
318 |
ttcccagtactcaactgatga |
338 |
Q |
| |
|
|| ||||||||||||| |||| |
|
|
| T |
8899013 |
tttccagtactcaacttatga |
8898993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 31727471 - 31727173
Alignment:
| Q |
18 |
aagtcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccgg |
117 |
Q |
| |
|
|||||||| |||||||||||||| || || |||| |||||||| || || ||||| |||| ||||||||||| || | ||||||| || ||||||| |
|
|
| T |
31727471 |
aagtcagagccactagcatcaatggccaccgaaaccggttgattagctacggctttttgcaatgcctgctcatcatttacggggacattctcgtacccgg |
31727372 |
T |
|
| Q |
118 |
taatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaat |
217 |
Q |
| |
|
|||||| | ||| | || | ||| | || | |||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| || |
|
|
| T |
31727371 |
aaatggttgcagcagagctgcctacttcagttttattgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggat |
31727272 |
T |
|
| Q |
218 |
gatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaa |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31727271 |
gatgaattcaaaagcatcatccataagaccaccctcacaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaa |
31727173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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