View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18784_high_7 (Length: 350)
Name: NF18784_high_7
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18784_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 32272168 - 32272486
Alignment:
| Q |
16 |
cacttcaaggcaatcacagccattgtgggaccaccaacatatccagctccaatgcaacaaattttcaccatttttgctttttcttaacttccttcactgt |
115 |
Q |
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| T |
32272168 |
cacttcaaggcaatcacagccattgtgggaccaccaacatatccagctccaatgcaacaaattttcaccatttttgctttttcttaacttccttcactgt |
32272267 |
T |
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| Q |
116 |
gtgacatgaagatcaaaatcaaaataattcatacatataaacaatgtatattactttgaaatgcttattattggttaagaccaaaattgaataatttaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32272268 |
gtgacatgaagatcaaaatcaaaataattcatacatataaacaatgtatattactttgaaatgcttattattggttaagaccaaaattgaataattt-at |
32272366 |
T |
|
| Q |
216 |
gaacatgaaaataatataatttataaaagcgaaatgtttcttgacacggatctagacacagacacaacatgtttataaggtttgcgagttttaaattata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32272367 |
gaacatgaaaataatataatttataaaagcgaaatgtttcttgacacggatctagacacagacacaacatgtttataaggtttgcaagttttaaattata |
32272466 |
T |
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| Q |
316 |
ttatctttatcatccgatgt |
335 |
Q |
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|||||||| ||||||||||| |
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| T |
32272467 |
ttatctttctcatccgatgt |
32272486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 45416267 - 45416311
Alignment:
| Q |
24 |
ggcaatcacagccattgtgggaccaccaacatatccagctccaat |
68 |
Q |
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| T |
45416267 |
ggcaataacagccattgttggaccccctacatatccagctccaat |
45416311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 19327337 - 19327411
Alignment:
| Q |
16 |
cacttcaaggcaatcacagccattgtgggaccaccaacatatccagctccaatgcaacaaattttcaccattttt |
90 |
Q |
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| T |
19327337 |
cacttcaaagcaatcacagccattgttggaccaccaacatagccagctccaatgcaacaaatcttcaccattttt |
19327411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 3665213 - 3665277
Alignment:
| Q |
25 |
gcaatcacagccattgtgggaccaccaacatatccagctccaatgcaacaaattttcaccatttt |
89 |
Q |
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| T |
3665213 |
gcaatgactgccattgttggaccaccgacatatccggcaccaatgcagcaaatcttcaccatttt |
3665277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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