View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18784_low_12 (Length: 268)
Name: NF18784_low_12
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18784_low_12 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 31863968 - 31863705
Alignment:
| Q |
5 |
gtcatcatgatcttcatcatcatcactgacttcagactttgacttatcacatccttcttcctatggaggatttgttgagacaatcattcatatttttcat |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31863968 |
gtcatcatgatcttcatcatcatcgctgacttcagactttgacttatcacacccttcttcctctggaggatttgttgagacaatcattcatatttttcat |
31863869 |
T |
|
| Q |
105 |
gaatatatatcaaagaaaaataaatactaaataaactaatcaaaactcgagaaagacagcnnnnnnnnnnnnnnnacttaataatttaaacttgtagagt |
204 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||| || |||||||||||| |
|
|
| T |
31863868 |
gaatatatatcaaagaaaaataaataataaataaactaatcgaaactcgagaaagacaacttttttgaaatttttacttaataactttaacttgtagagt |
31863769 |
T |
|
| Q |
205 |
ataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattctt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31863768 |
ataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattctt |
31863705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 31929951 - 31929863
Alignment:
| Q |
180 |
acttaataatttaaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattctt |
268 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||| |||||| |||||||||| |||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
31929951 |
acttaataaattaaatttgtagagtatcatcattatcttatagatccaacctacttcatatggcgtttttttacaatcaccacattctt |
31929863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 31898007 - 31897919
Alignment:
| Q |
180 |
acttaataatttaaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattctt |
268 |
Q |
| |
|
||||||||| |||||||||||||| | ||| |||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
31898007 |
acttaataaattaaacttgtagagagtcatcattatcttatagatccaacctacttcatacggcgttcttttacaatcaccacattctt |
31897919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 9695807 - 9695759
Alignment:
| Q |
18 |
tcatcatcatcactgacttcagactttgacttatcacatccttcttcct |
66 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
9695807 |
tcatcatcatcattcacttcagacttggacttctcagatccttcttcct |
9695759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University