View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18784_low_2 (Length: 642)

Name: NF18784_low_2
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18784_low_2
NF18784_low_2
[»] chr8 (11 HSPs)
chr8 (296-624)||(28692178-28692515)
chr8 (19-203)||(28691998-28692182)
chr8 (206-271)||(36042838-36042903)
chr8 (172-270)||(41849442-41849536)
chr8 (171-255)||(13236242-13236323)
chr8 (206-287)||(31277981-31278063)
chr8 (226-276)||(39295473-39295523)
chr8 (206-251)||(12181911-12181956)
chr8 (206-251)||(12426339-12426384)
chr8 (216-315)||(24606873-24606973)
chr8 (212-268)||(35480977-35481033)
[»] chr4 (5 HSPs)
chr4 (206-276)||(2113931-2114001)
chr4 (206-270)||(48653760-48653824)
chr4 (170-270)||(29369862-29369967)
chr4 (211-257)||(4596445-4596491)
chr4 (212-296)||(53178845-53178930)
[»] chr6 (5 HSPs)
chr6 (170-276)||(34540827-34540930)
chr6 (178-287)||(5608079-5608185)
chr6 (206-261)||(11274644-11274699)
chr6 (171-276)||(33344881-33344983)
chr6 (249-293)||(7545084-7545129)
[»] scaffold0777 (1 HSPs)
scaffold0777 (206-276)||(5937-6007)
[»] chr7 (5 HSPs)
chr7 (215-276)||(33480458-33480519)
chr7 (212-316)||(48393207-48393311)
chr7 (170-251)||(13431656-13431734)
chr7 (177-261)||(36066178-36066258)
chr7 (215-276)||(26914310-26914371)
[»] chr5 (7 HSPs)
chr5 (212-276)||(3193489-3193553)
chr5 (206-292)||(27548484-27548570)
chr5 (439-527)||(9562518-9562607)
chr5 (215-270)||(18600482-18600537)
chr5 (171-275)||(502862-502959)
chr5 (238-293)||(16569251-16569307)
chr5 (212-276)||(39542507-39542570)
[»] chr2 (7 HSPs)
chr2 (206-310)||(40705853-40705958)
chr2 (208-321)||(15925926-15926043)
chr2 (170-276)||(16646926-16647029)
chr2 (229-284)||(15925596-15925651)
chr2 (171-276)||(44157275-44157376)
chr2 (238-276)||(18829934-18829972)
chr2 (215-275)||(32596747-32596807)
[»] chr1 (7 HSPs)
chr1 (213-270)||(30718180-30718237)
chr1 (215-270)||(3265439-3265494)
chr1 (212-287)||(36382976-36383053)
chr1 (181-284)||(38742464-38742565)
chr1 (212-292)||(1153675-1153756)
chr1 (215-255)||(29062354-29062394)
chr1 (206-270)||(35204192-35204256)
[»] chr3 (5 HSPs)
chr3 (177-270)||(168659-168748)
chr3 (212-287)||(39838564-39838639)
chr3 (171-276)||(47000833-47000934)
chr3 (206-276)||(8266561-8266631)
chr3 (212-276)||(11365145-11365209)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 296 - 624
Target Start/End: Original strand, 28692178 - 28692515
Alignment:
Q  296 ctagaacacaaaaaatcttaaaaccggctctgcttttgatattagcggtcttccatttttatctatc----acaagaacatgttaattagcattagagta 391  Q
    ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    || ||||||||||||||||||||||||||    
T  28692178 ctagaacgcaaaaaatcttaaaaccgactctgcttttgatattggcggtcttccatttttatctatctatcactagaacatgttaattagcattagagta 28692277  T
Q  392 tgcagcctctatttggattctaaaaattcactgcacatacatgtatgtatgcatatacagagatgaaattacccatacatttct-----gtttgattggt 486  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||    
T  28692278 tgctgcctctatttggattctaaaaattcactgcacatacatgtatgtatgcatatacagagatgaaattacccatacatttcatttcagtttgattggt 28692377  T
Q  487 aggtgcaatcatgtaacctttaaacctacggaaaatgcagtccccggccacctccgaatttaagttagtggtgtataacttttagcatggagtttagaat 586  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28692378 aggtgcaatcatgtaacctttaaacctacagaaaatgcagtccccggccacctccgaatttatgttagtggtgtataacttttggcatggagtttagaat 28692477  T
Q  587 gacaatacatcactttttgacttttttatgttcatagt 624  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28692478 gacaatacatcactttttgacttttttatgttcatagt 28692515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 28691998 - 28692182
Alignment:
Q  19 cagagaaggaagagcagcgaaaagaacaacaaaaaagatccggtacttccaaaaccaacgacggtgcggccggcaacgatctggaggtgagggccacgcc 118  Q
    |||| ||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||||| || ||||| || ||||||||||| |||||||||| |    
T  28691998 cagaaaaggaagagcagcgaaaagaacaacaaaacagatctagtacttccaaaactaacgacgatgtggccgacagcgatctggaggcgagggccacgac 28692097  T
Q  119 cctcatcacaccaccacatagaggttctacattttggaaaagttgattggattttgagtaattctactgaaaatatatttctaga 203  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  28692098 ccttatcacaccaccacctagaggttctacattttggaaaagttgattgcattttgagcaattctactgaaaatatatttctaga 28692182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 36042903 - 36042838
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataattt 271  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36042903 agaaccttgattatgaattaattttttgcaacaaaaaatacaagaagaaagaaattcaaataattt 36042838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 41849442 - 41849536
Alignment:
Q  172 ttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    |||| |||||||| ||||||||||||| || |   ||||||||||||| ||| ||| |||| |||||||||| |||| |||||||||||||||||||||    
T  41849442 ttgattaattctattgaaaatatatttttaaa---gaatcttgattattaatgaatctttttcaacaaaaaa-acaaaaagaaagacattcaaataatt 41849536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 13236242 - 13236323
Alignment:
Q  171 tttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaa 255  Q
    ||||| |||||||| ||||||||||||| ||||   |||  |||||||| ||  |||||||||||||||| ||| ||||||||||    
T  13236242 tttgattaattctaatgaaaatatatttttaga---gaactttgattataaacgaattttttgcaacaaataatgcaagaagaaa 13236323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 31277981 - 31278063
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaa-ggcacaactttat 287  Q
    |||| ||||||||| ||| ||| ||||||| | |||||| |||||||||||| |||| ||||||  ||| |||||||||||||    
T  31277981 agaaccttgattataaatgaatcttttgcacctaaaaattcaagaagaaagagattcgaataataaaaatggcacaactttat 31278063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 39295523 - 39295473
Alignment:
Q  226 attttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    ||||||||||||||||| |||| ||||||| |||||| ||||||| |||||    
T  39295523 attttttgcaacaaaaattacatgaagaaacacattcgaataattaaaagg 39295473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 12181911 - 12181956
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaa 251  Q
    ||||| |||||||||||| ||| |||||||||||||| ||||||||    
T  12181911 agaattttgattatgaatgaatattttgcaacaaaaagtacaagaa 12181956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 12426339 - 12426384
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaa 251  Q
    ||||| |||||||||||| ||| |||||||||||||| ||||||||    
T  12426339 agaattttgattatgaatgaatattttgcaacaaaaagtacaagaa 12426384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 24606873 - 24606973
Alignment:
Q  216 ttatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg-cacaactttatagatttacctagaacacaaaaaatctt 314  Q
    |||| ||| ||| ||||||| ||||||||  ||||||||||||||| |||||| | ||||| ||||||||| | ||||  ||||  |||| |||||||||    
T  24606873 ttataaatgaatcttttgcagcaaaaaatgtaagaagaaagacatttaaataactaaaaggacacaactttgttgattcgcctaagacaccaaaaatctt 24606972  T
Q  315 a 315  Q
    |    
T  24606973 a 24606973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 35481033 - 35480977
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataa 268  Q
    |||||||| ||  ||| ||||||||||||||||||||||||||| | |||| |||||    
T  35481033 ttgattataaaaaaatcttttgcaacaaaaaatacaagaagaaaaatattcgaataa 35480977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 2113931 - 2114001
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  2113931 agaaccttgattatgaattaatcttttgcaataaaaaatacaagaagaaagacattcaaataattaaaagg 2114001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 48653760 - 48653824
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    |||||||| ||||||||| ||| ||||||||||||| || ||||||||||||||||| |||||||    
T  48653760 agaatcttaattatgaatgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataatt 48653824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 29369967 - 29369862
Alignment:
Q  170 ttttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttg-----caacaaaaaatacaagaagaaagacattcaa 264  Q
    |||||| |||||||| ||||||||||||| ||||  |  ||| | ||||||||| ||| ||||      |||||||||||||||||||||||||||||||    
T  29369967 ttttgattaattctattgaaaatatatttttagagaatcatcataattatgaatgaatcttttaatttacaacaaaaaatacaagaagaaagacattcaa 29369868  T
Q  265 ataatt 270  Q
    ||||||    
T  29369867 ataatt 29369862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 4596491 - 4596445
Alignment:
Q  211 cttgattatgaattaattttttgcaacaaaaaatacaagaagaaaga 257  Q
    ||||||||||||| ||| |||||||||||||||| ||| ||||||||    
T  4596491 cttgattatgaatgaatcttttgcaacaaaaaatgcaaaaagaaaga 4596445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 53178845 - 53178930
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaa-tacaagaagaaagacattcaaataatttaaa-ggcacaactttatagatttacc 296  Q
    |||||||||||| ||||||| ||||||||||| ||| | |||||||||||| |||||||| |||   ||||||||||| ||||||||    
T  53178845 ttgattatgaatgaattttt-gcaacaaaaaaataccataagaaagacatttaaataattaaaataacacaactttattgatttacc 53178930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 34540930 - 34540827
Alignment:
Q  170 ttttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataat 269  Q
    |||||| || ||||| ||||||||||||| || ||   |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||    
T  34540930 ttttgattagttctattgaaaatatatttttaaat---aatcttgattatgaataaattttttgcaacaaaaaatacatgaagaaatacattcaaatgat 34540834  T
Q  270 ttaaagg 276  Q
    | |||||    
T  34540833 taaaagg 34540827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 5608079 - 5608185
Alignment:
Q  178 aattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaa-gg 276  Q
    ||||||| ||| ||||||||||||||   |||| |||||||||||| | | ||||| ||||||||||| || ||||||||||||||||||||||||| ||    
T  5608079 aattctattgagaatatatttctaga---gaattttgattatgaatga-tcttttgtaacaaaaaatataaaaagaaagacattcaaataatttaaaggg 5608174  T
Q  277 cacaactttat 287  Q
    |||||||||||    
T  5608175 cacaactttat 5608185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 11274644 - 11274699
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacatt 261  Q
    ||||| |||||||||||| ||| |||||||||||||| |||||||| ||| |||||    
T  11274644 agaattttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaacatt 11274699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 33344881 - 33344983
Alignment:
Q  171 tttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    ||||| |||||||| ||||||||||||| |||||   ||  |||||||| ||| ||| |||||||||||||||| | |||||||| | |||  |||||||    
T  33344881 tttgattaattctattgaaaatatatttttagat---aactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataatt 33344977  T
Q  271 taaagg 276  Q
     |||||    
T  33344978 aaaagg 33344983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 7545084 - 7545129
Alignment:
Q  249 gaagaaagacattcaaataatttaaa-ggcacaactttatagattt 293  Q
    |||| ||||||||||||||||||||| ||||||||||||| |||||    
T  7545084 gaaggaagacattcaaataatttaaagggcacaactttattgattt 7545129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 5937 - 6007
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    ||||| |||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  5937 agaattttgattatgaatgaattttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagg 6007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 33480519 - 33480458
Alignment:
Q  215 attatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||||    
T  33480519 attatgaattaatcttctgcaataaaaaatacaagaagaaagacattcaaataattaaaagg 33480458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 48393311 - 48393207
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaaggcacaactttatagatttacctagaacacaaaaaat 311  Q
    |||||||| ||| ||| |||  |||||||||||| ||||||||||||||| |||||||| |||| |||||||||||  |||  | ||| |||||||||||    
T  48393311 ttgattataaataaatctttcacaacaaaaaatataagaagaaagacatttaaataattaaaagacacaactttattaattctcttaggacacaaaaaat 48393212  T
Q  312 cttaa 316  Q
     ||||    
T  48393211 attaa 48393207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 13431734 - 13431656
Alignment:
Q  170 ttttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaa 251  Q
    |||||| |||||||| ||||||||||||| | ||   ||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  13431734 ttttgaataattctattgaaaatatatttgtgga---gaaccttgattatgaatgaatctttagcaacaaaaaatacaagaa 13431656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 36066178 - 36066258
Alignment:
Q  177 taattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacatt 261  Q
    ||||| || ||||||||||||| ||||   |||| |||||||||||| ||| |||| |||||||| |||||||||||||||||||    
T  36066178 taattgtattgaaaatatatttttaga---gaattttgattatgaataaatcttttacaacaaaa-atacaagaagaaagacatt 36066258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 26914371 - 26914310
Alignment:
Q  215 attatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    ||||| ||| ||| |||||||||||||||| |||||||||| | ||| |||||||| |||||    
T  26914371 attataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaaagg 26914310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 3193553 - 3193489
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    |||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  3193553 ttgattatgaatgaatcttttgcaataaaaaatgcaagaagaaagacattcaaataattaaaagg 3193489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 27548570 - 27548484
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaaggcacaactttatagatt 292  Q
    ||||||||  |||||||| ||||||| |||  |||||||| |||||||||||||||  ||||||| |||||||||||||||| ||||    
T  27548570 agaatcttatttatgaatgaatttttcgcactaaaaaatataagaagaaagacatttgaataattaaaaggcacaactttattgatt 27548484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 527
Target Start/End: Original strand, 9562518 - 9562607
Alignment:
Q  439 tatgcatatacagagatgaaattacccatacatt-tctgtttgattggtaggtgcaatcatgtaacctttaaacctacggaaaatgcagt 527  Q
    |||| ||||||||||| |||| |||||||||||| || |||| ||||||||||||||||||| | ||| |||||||||| || |||||||    
T  9562518 tatgaatatacagagaagaaactacccatacattctcggtttaattggtaggtgcaatcatgcagcctgtaaacctacgtaatatgcagt 9562607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 18600482 - 18600537
Alignment:
Q  215 attatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    ||||||||| | | |||||||| ||||||||||||||||||||  |||||||||||    
T  18600482 attatgaatgattcttttgcaataaaaaatacaagaagaaagatgttcaaataatt 18600537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 502862 - 502959
Alignment:
Q  171 tttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    ||||| |||||||| ||||||||||||| ||||   |||  |||||||||||| ||| |||||||| |||||| | |||    |||||||||||||||||    
T  502862 tttgattaattctattgaaaatatatttttaga---gaactttgattatgaatgaatcttttgcaaaaaaaaaaaaaag----aagacattcaaataatt 502954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 16569307 - 16569251
Alignment:
Q  238 aaaaaatacaagaagaaagacattcaaataatttaaa-ggcacaactttatagattt 293  Q
    ||||||| ||||||||||||||||  ||||||||||| || |||||||||| |||||    
T  16569307 aaaaaatgcaagaagaaagacattgcaataatttaaacggtacaactttattgattt 16569251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 39542507 - 39542570
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    |||||||||||| || ||||  ||| ||||||| |||||||||||||||||| |||||| |||||    
T  39542507 ttgattatgaataaactttta-caataaaaaatgcaagaagaaagacattcatataattaaaagg 39542570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 40705958 - 40705853
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaa-ggcacaactttatagatttacctagaacac 304  Q
    |||| ||||||||  ||| ||||||||| || ||||||| ||||||||||||||||||||||||| ||| ||| || |||||| |||| | |||| ||||    
T  40705958 agaaccttgattacaaataaattttttgtaataaaaaatgcaagaagaaagacattcaaataattaaaagggcgcatctttattgattcatctaggacac 40705859  T
Q  305 aaaaaa 310  Q
    ||||||    
T  40705858 aaaaaa 40705853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 321
Target Start/End: Original strand, 15925926 - 15926043
Alignment:
Q  208 aatcttgattatgaattaatt---ttttgcaacaaaaaatacaagaagaaagacattcaaataatt-taaaggcacaactttatagatttacctagaaca 303  Q
    ||||||||||||||||||||    ||||||||||||||||  ||||||||| | ||| |||||||| |||||| |||| ||||| |||| ||  |  |||    
T  15925926 aatcttgattatgaattaataacattttgcaacaaaaaatgtaagaagaaaaatatttaaataattataaaggtacaattttattgattcactcatgaca 15926025  T
Q  304 caaaaaatcttaaaaccg 321  Q
    |||||||||||| |||||    
T  15926026 caaaaaatcttagaaccg 15926043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 16647029 - 16646926
Alignment:
Q  170 ttttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataat 269  Q
    |||||| |||||||| ||||||||| ||| ||||   |||| || ||||| ||| ||| || |||||||||||||| ||||||||| | ||| |||||||    
T  16647029 ttttgattaattctattgaaaatatctttttaga---gaattttaattataaatgaatcttgtgcaacaaaaaataaaagaagaaaaatattaaaataat 16646933  T
Q  270 ttaaagg 276  Q
    | |||||    
T  16646932 taaaagg 16646926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 15925596 - 15925651
Alignment:
Q  229 ttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaaggcacaactt 284  Q
    ||||| |||||||||||||| | ||||||| ||||||||||| ||| |||||||||    
T  15925596 ttttgtaacaaaaaatacaaaaggaaagacgttcaaataattaaaaagcacaactt 15925651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 44157275 - 44157376
Alignment:
Q  171 tttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    ||||| |||||||| |  |||||||||| ||||   ||| ||||||||||||| || |||| ||| |||||| |||||||||||| | ||||||||||||    
T  44157275 tttgattaattctattagaaatatatttttaga---gaaacttgattatgaatgaaatttt-gcagcaaaaattacaagaagaaatatattcaaataatt 44157370  T
Q  271 taaagg 276  Q
     |||||    
T  44157371 aaaagg 44157376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 18829972 - 18829934
Alignment:
Q  238 aaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  18829972 aaaaaatacaagaagaaagacatttaaataattgaaagg 18829934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 32596807 - 32596747
Alignment:
Q  215 attatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaag 275  Q
    ||||| ||| ||| |||| ||| ||||||||||| |||||||||||| |||||||| ||||    
T  32596807 attattaatgaatcttttacaataaaaaatacaaaaagaaagacattaaaataattaaaag 32596747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 30718180 - 30718237
Alignment:
Q  213 tgattatgaattaattttttgcaac-aaaaaatacaagaagaaagacattcaaataatt 270  Q
    ||||||||||| |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  30718180 tgattatgaatgaatttttt-caacaaaaaaatataagaagaaagacattcaaataatt 30718237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 3265494 - 3265439
Alignment:
Q  215 attatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    ||||| ||| ||| |||||||||||||||| || |||||||||||||| |||||||    
T  3265494 attatcaatgaatcttttgcaacaaaaaatgcacgaagaaagacattcgaataatt 3265439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 36382976 - 36383053
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt--taaaggcacaactttat 287  Q
    |||||||||||| ||| |||  |||||||||||  | ||||||| ||||||||||||||   ||||||||||||||||    
T  36382976 ttgattatgaatgaatatttcacaacaaaaaatgtatgaagaaaaacattcaaataattaaaaaaggcacaactttat 36383053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 38742464 - 38742565
Alignment:
Q  181 tctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg-cac 279  Q
    |||| ||||||||||||| ||||   |||  |||||||||||||||| |||| ||| ||||||| || | | |||||||||||||| ||| ||||| |||    
T  38742464 tctattgaaaatatatttttaga---gaactttgattatgaattaatcttttacaaaaaaaaatgcagggaaaaagacattcaaatcattaaaaggacac 38742560  T
Q  280 aactt 284  Q
    |||||    
T  38742561 aactt 38742565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 1153756 - 1153675
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaa-ggcacaactttatagatt 292  Q
    |||||| | ||||||| |||||||||||||||  |||||||||||| ||||  |||||| ||| || |||||||||| ||||    
T  1153756 ttgattttcaattaatcttttgcaacaaaaaacgcaagaagaaagatattcggataattaaaacggtacaactttattgatt 1153675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29062394 - 29062354
Alignment:
Q  215 attatgaattaattttttgcaacaaaaaatacaagaagaaa 255  Q
    ||||| ||| ||| |||||||||||||||||||||||||||    
T  29062394 attataaataaatcttttgcaacaaaaaatacaagaagaaa 29062354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 35204256 - 35204192
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    ||||| |||||||||||| ||| |||||||| ||||| |||||||| ||| |||||  |||||||    
T  35204256 agaattttgattatgaatgaatattttgcaataaaaagtacaagaaaaaaaacattggaataatt 35204192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 168748 - 168659
Alignment:
Q  177 taattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    |||||||| ||||||||||||| ||||   ||| ||||||||||||| ||| ||||| |||||||||| ||| |||||||| |||  |||||||    
T  168748 taattctattgaaaatatattt-taga---gaaccttgattatgaatgaatcttttgtaacaaaaaatgcaacaagaaagaaattagaataatt 168659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 39838564 - 39838639
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaaggcacaactttat 287  Q
    |||||||||||| ||| ||||||||||||| |||||| || || || |||| | ||||| ||| ||||||||||||    
T  39838564 ttgattatgaatgaatcttttgcaacaaaagatacaataataatgatattcgactaattaaaaagcacaactttat 39838639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 276
Target Start/End: Complemental strand, 47000934 - 47000833
Alignment:
Q  171 tttgagtaattctactgaaaatatatttctagattagaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatt 270  Q
    ||||| |||||||| |||||| |||||| |||||   ||| |||||||| ||| ||| ||||||||||||||||| ||||||||| | ||| |||| |||    
T  47000934 tttgattaattctattgaaaa-atatttttagat---aattttgattataaatgaatattttgcaacaaaaaatataagaagaaaaatatttaaatgatt 47000839  T
Q  271 taaagg 276  Q
     |||||    
T  47000838 aaaagg 47000833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 8266631 - 8266561
Alignment:
Q  206 agaatcttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    |||| ||||||||| ||| ||  |||| ||||||||||||||| |||| ||||||| |||||||| |||||    
T  8266631 agaaccttgattattaatgaaccttttacaacaaaaaatacaaaaagagagacatttaaataattaaaagg 8266561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 11365145 - 11365209
Alignment:
Q  212 ttgattatgaattaattttttgcaacaaaaaatacaagaagaaagacattcaaataatttaaagg 276  Q
    |||||||| ||| ||| |||||||||||||||| |||||||||| | |||  ||||||| |||||    
T  11365145 ttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaagg 11365209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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