View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18784_low_3 (Length: 552)

Name: NF18784_low_3
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18784_low_3
NF18784_low_3
[»] chr6 (9 HSPs)
chr6 (402-534)||(31046290-31046422)
chr6 (18-120)||(31045903-31046003)
chr6 (120-170)||(31046071-31046121)
chr6 (68-120)||(31035521-31035573)
chr6 (68-112)||(31056774-31056818)
chr6 (68-120)||(31080647-31080699)
chr6 (200-249)||(31052043-31052091)
chr6 (281-318)||(31103361-31103398)
chr6 (68-120)||(31110535-31110587)
[»] scaffold0018 (1 HSPs)
scaffold0018 (21-120)||(170727-170829)
[»] chr7 (1 HSPs)
chr7 (281-315)||(9559283-9559317)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 402 - 534
Target Start/End: Original strand, 31046290 - 31046422
Alignment:
Q  402 caaataccaaagcactaaatcactaaacttccatcttcatcttcttctcttcacacactccaatttgacatattgtcgtgaatgaatttgatttgtctct 501  Q
    ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31046290 caaataccaaaccactaaatcactacactgccatcttcatcttcttctcttcacacactccaatttaacatattgtcgtgaatgaatttgatttgtctct 31046389  T
Q  502 tcctaccggtttgtttactcatattcttaagaa 534  Q
    |||||||||||||||||||||||||||||||||    
T  31046390 tcctaccggtttgtttactcatattcttaagaa 31046422  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 31045903 - 31046003
Alignment:
Q  18 cttttctcttgtaaccttcacatgagactttcgtttttctcttcaggtataacaagtcccacatcgagtatgttttaaaacaggcatgaaggtttcccta 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  31045903 cttttctcttgtaaccttcacatgaaactttcgtttttctcttca--tataacaagtcccacatcgagtatgtgttaaaacaggcatgaagatttcccta 31046000  T
Q  118 taa 120  Q
    |||    
T  31046001 taa 31046003  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 31046071 - 31046121
Alignment:
Q  120 atatcatgtcattattgtggttgatgttatggattacaggtgattgcattt 170  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  31046071 atatcatgtcattattgtatttgatgttatggattacaagtgattgcattt 31046121  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 31035521 - 31035573
Alignment:
Q  68 aacaagtcccacatcgagtatgttttaaaacaggcatgaaggtttccctataa 120  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||    
T  31035521 aacaagttccacatcgagtatgtgttaaaacagtcatgaaggttttcctataa 31035573  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 31056774 - 31056818
Alignment:
Q  68 aacaagtcccacatcgagtatgttttaaaacaggcatgaaggttt 112  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  31056774 aacaagtcccacatcgagtatgtgttaaaacaggcaggaaggttt 31056818  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 31080647 - 31080699
Alignment:
Q  68 aacaagtcccacatcgagtatgttttaaaacaggcatgaaggtttccctataa 120  Q
    |||||||||||||| |||||||| |||||||| ||| |||||||| |||||||    
T  31080647 aacaagtcccacatagagtatgtgttaaaacatgcacgaaggtttacctataa 31080699  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 31052043 - 31052091
Alignment:
Q  200 cgttttggcctcttaagatatgttttcgtcaatcaatttagtcttatttt 249  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||||||    
T  31052043 cgttttggtctcttaa-atatattttcgtcgatcaatttagtcttatttt 31052091  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 31103361 - 31103398
Alignment:
Q  281 atcatgcaagactattaaatctaataataaaccactaa 318  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  31103361 atcatacaagaccattaaatctaataataaaccactaa 31103398  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 31110535 - 31110587
Alignment:
Q  68 aacaagtcccacatcgagtatgttttaaaacaggcatgaaggtttccctataa 120  Q
    ||||| ||||||||||||||||| |||||||| | ||||| |||| |||||||    
T  31110535 aacaaatcccacatcgagtatgtgttaaaacatgtatgaatgtttacctataa 31110587  T

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Target: scaffold0018 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 170829 - 170727
Alignment:
Q  21 ttctcttgtaaccttcacatgagactttcgtttttctcttcagg---tataacaagtcccacatcgagtatgttttaaaacaggcatgaaggtttcccta 117  Q
    |||||||||||||||||||||||||||| |||||||||||| ||    ||||||||||||||||||||||| | ||||||||   | |||||||| ||||    
T  170829 ttctcttgtaaccttcacatgagactttggtttttctcttcgggcataataacaagtcccacatcgagtatatgttaaaacatagaagaaggtttaccta 170730  T
Q  118 taa 120  Q
    |||    
T  170729 taa 170727  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 9559283 - 9559317
Alignment:
Q  281 atcatgcaagactattaaatctaataataaaccac 315  Q
    |||||||||||||||| ||||||||||||||||||    
T  9559283 atcatgcaagactattgaatctaataataaaccac 9559317  T

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