View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18784_low_4 (Length: 404)
Name: NF18784_low_4
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18784_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 29653443 - 29653158
Alignment:
| Q |
13 |
catcatcataatagtgttcttcaatgtgagcccaaactggcagatgcaaaattttgatctgctcacgacacctttccatcaaattttcactaagataaac |
112 |
Q |
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| T |
29653443 |
catcatcataatagtgttcttcaatgtgagcccaaactggcagatgcaaaattttgatctgctcacgacacctttccctcaaattttcactaagataaac |
29653344 |
T |
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| Q |
113 |
attacctcccttgatatcaagagattcaagaagcggacatcgatcaagaatcgcaatccatccaacttcgctacggtcatagtctttcatataagagtgg |
212 |
Q |
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| T |
29653343 |
attacctcccgtgatatcaagagattcaagaagcggacatcgatcaagaatcgcaagccatccaacttcgctacggtcatagtctttcatataaaagtgg |
29653244 |
T |
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| Q |
213 |
cttagtcgatatactgggtctaaaacactcaacttgagcgattttaaaagtgggcaagaccttgcaagaacttctagagagtcatg |
298 |
Q |
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| T |
29653243 |
cttagtcgatatactgggtctgcaacactcaacttgagcgattttaaaagtgggcaagaccttgcaagaacttctagagaatcatg |
29653158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 29681787 - 29681427
Alignment:
| Q |
14 |
atcatcataatagtgttcttcaatgtgagc-ccaaactggcagatgcaaaattttgatctgctcacgacacctttccatcaaattttcactaagataaac |
112 |
Q |
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| T |
29681787 |
atcatcataatagtgttcttcaatacgagggcctaactgacagccgcaaatttttgatcttctcatgacacctttccttcaaattttcattaaaataaac |
29681688 |
T |
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| Q |
113 |
attacctcccttgatatcaagagattcaagaagcggacatcgatcaagaatcgcaatccatccaacttcgctacggtcatagtctttcatataagagtgg |
212 |
Q |
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| T |
29681687 |
attgcctccccgaatgtcaagagattcaagaagcagacatcgatcaagaatcgcaagccatccaacttcgctgcggtcatagtctttcatataaaagtgg |
29681588 |
T |
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| Q |
213 |
cttagtcgatatactgggtctaaaacactcaacttgagcgattttaaaagtgggcaagaccttgcaagaacttctagagagtcatgtgttggctgcataa |
312 |
Q |
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||||||||||| ||||| || || | | ||||| |||||||||||||||||||| | ||| || ||||||||||| ||||||||| | | ||||| |
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| T |
29681587 |
cttagtcgatacactggttcagcaatatgaagtttgagagattttaaaagtgggcaagatcgtgccaggacttctagagaatcatgtgttagttccataa |
29681488 |
T |
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| Q |
313 |
gtgaaatgtttaactcttctaagtgaggaaactttctcacgcattctctgaatcctgcatc |
373 |
Q |
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||||||||| ||||||||||| || |||| |||| |||| |||| ||||||||||||||| |
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| T |
29681487 |
gtgaaatgtccaactcttctaaatgcggaagctttgtcacacattttctgaatcctgcatc |
29681427 |
T |
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