View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18784_low_9 (Length: 306)
Name: NF18784_low_9
Description: NF18784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18784_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 44472494 - 44472215
Alignment:
| Q |
20 |
gagaggtgatggtgataccaagtacaaaaaatttacatcgttatgatgacaacttactatatattttgaaagacaatagcaaacaatatttcaaaaacct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44472494 |
gagaggtgatggtgataccaagtacaaaaaatttacatcgttatgatgacaacttactatatattttgaaagacaatagcaaacaatatttcaaaaacct |
44472395 |
T |
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| Q |
120 |
ggcaaatcccaatctgtttcattagctcttgattattattttggagatcaaccaccatggaggccttggccaaggcaacctgaacagttctagatgatcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44472394 |
agcaaatcccaatctgtttcattagctcttgattattattttggagatcaaccaccatggaggccttggccaaggcaacctgaacagttctagatgatcc |
44472295 |
T |
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| Q |
220 |
aaagctctgttatcatcttgaagtttagcaatttgcaagaaacaaaccagataaaataatgacatgaatcacctatgcta |
299 |
Q |
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| T |
44472294 |
aaagctctgttatcatcttgaagtttagcaatttgaaagaaacaaaccagataaaataatgacatgaatcacctatgcta |
44472215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 44454323 - 44454138
Alignment:
| Q |
20 |
gagaggtgatggtgataccaagtacaaaaaatttacatcgttatgatgacaacttactatatattttgaaagacaatagcaaacaatatttcaaaaacct |
119 |
Q |
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||||||||||||||||||||||||||||||| || |||| ||||| | |||||||||| | |||||||||||| || | || | || ||| ||| |||| |
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| T |
44454323 |
gagaggtgatggtgataccaagtacaaaaaagtttcatcattatggtaacaacttactgtgtattttgaaagagaaaaacataaaagattgcaattacct |
44454224 |
T |
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| Q |
120 |
ggcaaatcccaatctgtttcattagctcttgattattattttggagatcaaccaccatggaggccttggccaaggcaacctgaaca |
205 |
Q |
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| T |
44454223 |
ggcaaatctcaatctgtttcattagctcctgatttttattttggagatcatccaccatggaggccttagccaaggcaacctgaaca |
44454138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 7518586 - 7518495
Alignment:
| Q |
116 |
acctggcaaatcccaatctgtttcattagctcttgattattattttggagatcaaccaccatggaggccttggccaaggcaacctgaacagt |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
7518586 |
acctggcaaatctcaatctgtttcattagctcttgatttttgttttggagatcatccaccatggaggccttaaccaaggcaacctgaacagt |
7518495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 44454091 - 44454013
Alignment:
| Q |
215 |
gatccaaagctctgttatcatcttgaagtttagcaatttgcaagaa--acaaaccagataaaataatgacatgaatcac |
291 |
Q |
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| T |
44454091 |
gatccaaagctctgttatcatcttgaagtttagctatctgcaagaaacacaaaccagataaaacaatgacatggatcac |
44454013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 11574895 - 11574804
Alignment:
| Q |
116 |
acctggcaaatcccaatctgtttcattagctcttgattattattttggagatcaaccaccatggaggccttggccaaggcaacctgaacagt |
207 |
Q |
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|||||||||||| ||||||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
11574895 |
acctggcaaatctcaatctgtttcatcagctcttgatttttgttttggagatcatccaccatggaggccttggccaaggcaaactgaacagt |
11574804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 636614 - 636674
Alignment:
| Q |
215 |
gatccaaagctctgttatcatcttgaagtttagcaatttgcaagaaacaaaccagataaaa |
275 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
636614 |
gatctaaagctctgttatcatcttgaagtttagcaatctgcaagaaacaaaccagataaaa |
636674 |
T |
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