View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18785_high_4 (Length: 334)
Name: NF18785_high_4
Description: NF18785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18785_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 27026053 - 27026372
Alignment:
| Q |
1 |
ttgattgttgtaatcctatagaaggagatgcaaagccattagcactccatcctgatcccaaaggagggtgataaacaacaccagaagttctgtagatgaa |
100 |
Q |
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| T |
27026053 |
ttgattgttgtaatcctatagaaggtgatgcaaagccattagcactccatcctgatcccagaggagggtgataaacaacaccagaagttctgtagatgaa |
27026152 |
T |
|
| Q |
101 |
aggaggaggacgtgcaccagggataacagcagtagaagaatgtcctgctaatccttctagtttcagagcatgcatgtgctgcaataatcttttcctatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
27026153 |
aggaggaggacgtgcaccagggataacagcagtagaagaatgtcctgctaatccttctagtttcggagcatgcatgtgctgcaatagtcttttcctatcc |
27026252 |
T |
|
| Q |
201 |
tctttcttctgagcaaaatcaacatacagtggtttgccatggaacatgcaccctgtagcatataacatcaacttaattgatgcataagcactaatataac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27026253 |
tctttcttctgagcaaaatcaacatacagtggtttgccatggaacatgcaccctgtagcatataacatcaacttaattgatgcataagcactaatataac |
27026352 |
T |
|
| Q |
301 |
ttctaacttggtaaaatatg |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
27026353 |
ttctaacttggtaaaatatg |
27026372 |
T |
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