View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18785_low_1 (Length: 609)
Name: NF18785_low_1
Description: NF18785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18785_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 34144886 - 34144556
Alignment:
| Q |
17 |
attctgggttggcaggatcccagatgcttcctcatgttcctcctgttgttgatgctccttctagggctgatacttttgacaatggtagcactagcacaag |
116 |
Q |
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| T |
34144886 |
attctgggttggcaggatcccagatgcttcctcatgttcctcctgttg---atgctccttctagggctgatacttttgacaatggtagcactagcacaag |
34144790 |
T |
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| Q |
117 |
caaccaggttcgattgccgggtagccgcaacgtttgagcctgcgtcggcgattggagtatcccaaacatcagcaag-ataataagacatattagtgttgt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
34144789 |
caaccaggttcgattgccgggtagccgcaacgtttgagcctgcgtcggcgattggagtatccccaacatcagcaagaataataagacatattagtgttgt |
34144690 |
T |
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| Q |
216 |
agttgtttagaagctgatgagnnnnnnntatttggacatctaaaacaggcatcaaataccatagtttgatgcagttttgatttttatattgttttctttt |
315 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34144689 |
agttgtttagaagctgatgag-ataaaatatttggacatctaaaacaggcatcaaataccataatttgatgcagttttgatttttatattgttttctttt |
34144591 |
T |
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| Q |
316 |
atctcataataaaagtgctctaagcttattatctt |
350 |
Q |
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| T |
34144590 |
atctcataataaaagtgctctaagcttattatctt |
34144556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 368 - 593
Target Start/End: Complemental strand, 34144569 - 34144333
Alignment:
| Q |
368 |
aagcttattatctttactttaaccaatgatgataatacttatgagttttcattaacaatattatgtttacataagataattatga-----------gtct |
456 |
Q |
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| T |
34144569 |
aagcttattatctttaccttaaccaatgatgataatacttatgagttttcattaacaatattatgtttacataagataattatgaaggcatgtggagtct |
34144470 |
T |
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| Q |
457 |
ctattgattttcttcatgtgactgtaatttttaagtctttacttgtgactaagttaagttatacaaacgatttgaattggacaattcatttgcttgaacc |
556 |
Q |
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| T |
34144469 |
ctattgattttcttcatgtgactgtaatttttaagtctttacttgtgactaagttaagttatacaaacgatttgaattggacaattcatttgcttgaacc |
34144370 |
T |
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| Q |
557 |
ttaaactaacatagtgtggttatttgaaccttaaact |
593 |
Q |
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| T |
34144369 |
ttaaactaacatagtgtggttatttgaaccttaaact |
34144333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 34154977 - 34154909
Alignment:
| Q |
244 |
tatttggacatctaaaacaggcatcaaataccatagtttgatgcagttttgatttttatattgttttct |
312 |
Q |
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| T |
34154977 |
tatttggacatctaaaactgacatcagataccatagtttgatgtagttttggtttttatattgttttct |
34154909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 34155130 - 34155086
Alignment:
| Q |
17 |
attctgggttggcaggatcccagatgcttcctcatgttcctcctg |
61 |
Q |
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| T |
34155130 |
attctgggttggcaggatcccatatgcttcctgatgttcctcctg |
34155086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 565
Target Start/End: Complemental strand, 34148864 - 34148812
Alignment:
| Q |
513 |
agttatacaaacgatttgaattggacaattcatttgcttgaaccttaaactaa |
565 |
Q |
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||||||| |||| |||| ||||||| |||||||| | |||||||||||||||| |
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| T |
34148864 |
agttatataaacaattttaattggaaaattcattcggttgaaccttaaactaa |
34148812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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