View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18785_low_2 (Length: 589)
Name: NF18785_low_2
Description: NF18785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18785_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 9 - 571
Target Start/End: Original strand, 45345159 - 45345718
Alignment:
| Q |
9 |
gattatactggagatattgatgatagaagaagcacatccggttatgtatttttactgtctggtggagcagtctcatgggcatcaaagaagcagcctgttg |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345159 |
gattatgctggagatattgatgatagaaggaccacatccgattatgtatttttactgtctggtggagcagtctcatgggcatcaaagaagcagcctgttg |
45345258 |
T |
|
| Q |
109 |
taacattgtccaccactgaggcagagtttgtggcagcctcctcttgtgcttgccaatgtgtgtggatgagaagggtgttggagaagattgggctctcaca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45345259 |
taacattgtccaccactgaggcagagtttgtggcagcctcctcttgtgctagccaatgtgtgtggatgagaagggtgttggaga---ttgggctctcaca |
45345355 |
T |
|
| Q |
209 |
aaacaagtgtactgttattatgtgtgacaacagttcaacaattaaattatccaaaaatccagtcatgcatggtagaagtaaacatatagatgtaaggttc |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45345356 |
aaacaagtgtactgttactatgtgtgacaacagttcaacaattaaattatcctaaaatccagtcatgcatggtagaagtaaacatatagatgtaaggttc |
45345455 |
T |
|
| Q |
309 |
catttcttgagagatctcactaaagaagaagtggtgaagctggtccattgtaacacaagaaatcaagtagctgatattatgaccaaaccgttgaaacttg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45345456 |
catttcttgagagatctcactaaagaagaagtggtgaaactggtccattgtaacacaagaaatcaagtagctgatattatgaccaaaccgttgaaacttg |
45345555 |
T |
|
| Q |
409 |
atgtgttccagaaattaagagatcagcttggagtttgtgaggtgccaagtttaaactgaatgcatacgtgaatcagtgaatcagtttaggggaggaattg |
508 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
45345556 |
atgtgttccaaaaattaagagatcagcttggagtttgtgaggtgccaagtttaaactgaatgcatatgtgaatcagtgaatcaatttaggggaggaattg |
45345655 |
T |
|
| Q |
509 |
ttgggatttattttaatgttactatttatttgggttcagttaataagttcctagtttctaggt |
571 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45345656 |
ttaggatttattttaatgttactatttatttgggttcagttaataagttcctagtttctaggt |
45345718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 505 - 561
Target Start/End: Original strand, 45341300 - 45341356
Alignment:
| Q |
505 |
attgttgggatttattttaatgttactatttatttgggttcagttaataagttccta |
561 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45341300 |
attgttgggatttattttaatgttactatttatttgggttcagttaataagttccta |
45341356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 354 - 571
Target Start/End: Complemental strand, 33361771 - 33361562
Alignment:
| Q |
354 |
cattgtaacacaagaaatcaagtagctgatattatgaccaaaccgttgaaacttgatgtgttccagaaattaagagatcagcttggagtttgtgaggtgc |
453 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||| || || |||| ||||||||| ||||||||||||||||||| |
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|
| T |
33361771 |
cattgtaacacaagcaatcaagtagctgatattgtgactaaaccgttgacacttgatgtatttcataaatcaagagatcaacttggagtttgtgaggtgc |
33361672 |
T |
|
| Q |
454 |
caagtttaaactgaatgcatacgtgaatcagtgaatcagtttaggggaggaattgttgggatttattttaatgttactatttatttgggttcagttaata |
553 |
Q |
| |
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||| |||||| ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
33361671 |
caaatttaaattgaatgcatgc--------atgaatcagtttaggggaggaattgttggaatttattttaatgttgctatttatttgggttgagttaata |
33361580 |
T |
|
| Q |
554 |
agttcctagtttctaggt |
571 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
33361579 |
agttcctagtttctaggt |
33361562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 354 - 571
Target Start/End: Original strand, 33543249 - 33543463
Alignment:
| Q |
354 |
cattgtaacacaagaaatcaagtagctgatattatgaccaaaccgttg---aaacttgatgtgttccagaaattaagagatcagcttggagtttgtgagg |
450 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| |||||||||||||| | ||||||||| ||||| |||| ||||||||| ||| |||||| ||||| |
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|
| T |
33543249 |
cattgtaacacaagcaatcgagtagctgatattgtgaccaaaccgttgttgacacttgatgtattccataaatcaagagatcaacttagagtttctgagg |
33543348 |
T |
|
| Q |
451 |
tgc--caagtttaaactgaatgcatacgtgaatcagtgaatcagtttaggggaggaattgttgggatttattttaatgttactatttatttgggttcagt |
548 |
Q |
| |
|
||| | | ||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
33543349 |
tgctgccaaattaaattgaatgcatgcatgaa--------tcagtttaggggaggaattgttgggatttattttaatgttgctatttatttgggttgagt |
33543440 |
T |
|
| Q |
549 |
taataagttcctagtttctaggt |
571 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
33543441 |
taataagttcctagtttctaggt |
33543463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 506 - 571
Target Start/End: Complemental strand, 28302770 - 28302705
Alignment:
| Q |
506 |
ttgttgggatttattttaatgttactatttatttgggttcagttaataagttcctagtttctaggt |
571 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28302770 |
ttgttcggatttattttaatgttactatttatttgggttcagttaataagttcttagtttctaggt |
28302705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 30827793 - 30827744
Alignment:
| Q |
264 |
aatccagtcatgcatggtagaagtaaacatatagatgtaaggttccattt |
313 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||||| || ||||| |
|
|
| T |
30827793 |
aatccagttatgcatggaaaaagtaaacatatagatgtaagatttcattt |
30827744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 40609902 - 40609865
Alignment:
| Q |
264 |
aatccagtcatgcatggtagaagtaaacatatagatgt |
301 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
40609902 |
aatccagtcatgcatggtagatgcaaacatatagatgt |
40609865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 34190042 - 34190116
Alignment:
| Q |
246 |
acaattaaattatccaaaaatccagtcatgcatggtagaagtaaacatatagatgtaaggttccatttcttgaga |
320 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| ||||| |||||||| ||||| ||||| ||||| |||||| |
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|
| T |
34190042 |
acaattaaattatcaaaaaatccagttttgcatggaagaagcaaacatattgatgtcaggtttcattttttgaga |
34190116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 1374119 - 1374222
Alignment:
| Q |
231 |
tgtgacaacagttcaacaattaaattatccaaaaatccagtcatgcatggtagaagtaaacatatagatgtaaggttccatttcttgagagatctcacta |
330 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||| || ||||| || ||||| ||||| || ||||| |||||||| |||||| | ||||| | || |
|
|
| T |
1374119 |
tgtgataacagttccacaattaagttgtccaaaaatcctgttatgcacggaagaagcaaacacatcgatgtgaggttccacttcttgtgtgatctaatta |
1374218 |
T |
|
| Q |
331 |
aaga |
334 |
Q |
| |
|
|||| |
|
|
| T |
1374219 |
aaga |
1374222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 9579563 - 9579487
Alignment:
| Q |
237 |
aacagttcaacaattaaattatccaaaaatccagtcatgcatggtagaagtaaacatatagatgtaaggttccattt |
313 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||| | ||||| ||||||||||| || ||||| ||||| ||||| |
|
|
| T |
9579563 |
aacagttcaactattaaattgtcaaaaaatccagttctacatggaagaagtaaacacattgatgtgaggtttcattt |
9579487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 20545415 - 20545458
Alignment:
| Q |
264 |
aatccagtcatgcatggtagaagtaaacatatagatgtaaggtt |
307 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
20545415 |
aatccagtcatgcatggtagatgcaaacatatagatgtcaggtt |
20545458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 654825 - 654773
Alignment:
| Q |
75 |
gcagtctcatgggcatcaaagaagcagcctgttgtaacattgtccaccactga |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| || ||||| || |||||||| |
|
|
| T |
654825 |
gcagtctcttgggcatcaaagaagcagcttgtagttacattatctaccactga |
654773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 34591153 - 34591232
Alignment:
| Q |
231 |
tgtgacaacagttcaacaattaaattatccaaaaatccagtcatgcatggtagaagtaaacatatagatgtaaggttcca |
310 |
Q |
| |
|
|||||||| |||||| ||| || || || |||||||||||||||||||| || |||||||| || ||||| |||||||| |
|
|
| T |
34591153 |
tgtgacaatagttcatcaacaaagttgtcgaaaaatccagtcatgcatggaaggagtaaacacattgatgtcaggttcca |
34591232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 322
Target Start/End: Original strand, 47144702 - 47144794
Alignment:
| Q |
230 |
gtgtgacaacagttcaacaattaaattatccaaaaatccagtcatgcatggtagaagtaaacatatagatgtaaggttccatttcttgagaga |
322 |
Q |
| |
|
||||||||| || ||| |||| || |||| || |||||||| |||||||| ||| | || ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
47144702 |
gtgtgacaatagctcatcaataaagctatctaagaatccagttatgcatgggagatgcaagcatatagatgtgaggtttcatttcttaagaga |
47144794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 34600144 - 34600220
Alignment:
| Q |
219 |
actgttattatgtgtgacaacagttcaacaattaaattatccaaaaatccagtcatgcatggtagaagtaaacatat |
295 |
Q |
| |
|
|||||||| |||||||| |||| |||||| ||||| | || ||||||||||| |||||||| || || |||||||| |
|
|
| T |
34600144 |
actgttataatgtgtgataacacctcaacagttaaactttcaaaaaatccagtaatgcatggaaggagcaaacatat |
34600220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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