View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18785_low_3 (Length: 569)
Name: NF18785_low_3
Description: NF18785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18785_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 9 - 554
Target Start/End: Original strand, 52584618 - 52585164
Alignment:
| Q |
9 |
gacatcatcaattgtagctagcnnnnnnngtctgagagaaagtgattgaaaaaataaactagttctatacttgtattgtattgtgtcccttaagggaaca |
108 |
Q |
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| T |
52584618 |
gacatcattaattgtagctagctttttttgtctgagagaaagtgattgaataaataaactagttctatacttgtattgtattgtgtcccttaagggaaca |
52584717 |
T |
|
| Q |
109 |
actcaattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaagagaaaaggagtgaaa |
208 |
Q |
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| T |
52584718 |
actcaattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaggagaaaaggagtgaaa |
52584817 |
T |
|
| Q |
209 |
gggggaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatattctgaagacatgagtt |
308 |
Q |
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| T |
52584818 |
gggggaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatattctgaagacatgagtt |
52584917 |
T |
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| Q |
309 |
aataagacattaacatagaagtggtgaatccgtactaggtgcacgaagccctattgaggttgagcagtggattcattggtgagcataatcagtggtcaca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584918 |
aataagacattaacatagaagtggtgaatccgtactaggtgcacgaagccctattgaggttgagcagtggattcattggtgagcataatcagtggtcaca |
52585017 |
T |
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| Q |
409 |
atcaaatcccaagtttcatgtttgaatattgcagctctagtattcagtaagataaatgtgatagctc-aaactaacttggaggagtactattactataca |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52585018 |
atcaaatcccaagtttcatgtttgaatattgcagctctagtattcagtaagataaatgtgatagctcaaaactaacttggaggagtactattactataca |
52585117 |
T |
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| Q |
508 |
ctgcacatgccaaaatcatacttaaatttatgaccacttgggatatg |
554 |
Q |
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| T |
52585118 |
ctgcacatgccaaaatcatacttaaatttatgaccacttgggatatg |
52585164 |
T |
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