View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18785_low_6 (Length: 289)
Name: NF18785_low_6
Description: NF18785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18785_low_6 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 6551525 - 6551255
Alignment:
| Q |
19 |
caatcgtatccactgaatgtccatataaagcattattcgcagataatcgcactacaccgacagaaaaatacaaagacatagcagattagccaacaatttt |
118 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
6551525 |
caattgtatccactgaatgtccatagaaagcattattcgcagataatcgcactacaccaacagaaacatacaaagacatagtagattagccaacaatttt |
6551426 |
T |
|
| Q |
119 |
cacagtaaactttagcatacaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaacttgagaaaaggctgctttcgtgccgagag |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6551425 |
cacagtaaactttagcataaaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaacttgagaaaaggctgctttcgtgccgagag |
6551326 |
T |
|
| Q |
219 |
gcaactatatcatcttctttactatcttcaaagggttttattccttgatcagaatctgcatgacataacaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6551325 |
gcaactatatcatcttctttactatcttcaaagggttttattccttgatcagaatctacatgacataacaa |
6551255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 49061395 - 49061582
Alignment:
| Q |
26 |
atccactgaatgtccatataaagcattattcgcagataatcgcactacaccgacagaaaaatacaaagacatagcagattagccaacaattttcacagta |
125 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||| || || ||| |||||||||||||||| ||||| ||| | |||| ||| | |
|
|
| T |
49061395 |
atccactgaatgtccatgtaaagcattattcacagataatcgcactgtacgaactgaagcatacaaagacatagcatattagtcaatagttttgacaaga |
49061494 |
T |
|
| Q |
126 |
aactttagcatacaattttgcaaagaaaactcacatttcttgctgaacaaatctgacagagaacttgagaaaaggctgctttcgtgcc |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||| |||| ||||||||||| ||||||||||||| || || |||||||||| |
|
|
| T |
49061495 |
aactttagcatacaattttgaaaagaaaacttacgtttcctgctaaacaaatctgatggagaacttgagaagagactactttcgtgcc |
49061582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University