View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_high_10 (Length: 466)

Name: NF18786_high_10
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_high_10
NF18786_high_10
[»] chr5 (10 HSPs)
chr5 (57-443)||(36202910-36203297)
chr5 (311-424)||(29006285-29006398)
chr5 (299-418)||(9851621-9851740)
chr5 (145-299)||(29006447-29006603)
chr5 (55-117)||(9851319-9851381)
chr5 (329-433)||(11042983-11043087)
chr5 (348-405)||(15205199-15205256)
chr5 (34-122)||(29006660-29006747)
chr5 (308-341)||(28270773-28270806)
chr5 (20-56)||(2022669-2022705)
[»] chr3 (10 HSPs)
chr3 (140-307)||(52653728-52653896)
chr3 (147-309)||(33709782-33709945)
chr3 (299-435)||(52653576-52653712)
chr3 (150-308)||(40574317-40574477)
chr3 (299-442)||(33709617-33709752)
chr3 (55-147)||(52653924-52654016)
chr3 (348-439)||(50914636-50914727)
chr3 (324-419)||(16729628-16729721)
chr3 (197-309)||(31362294-31362407)
chr3 (55-147)||(33709981-33710072)
[»] chr8 (6 HSPs)
chr8 (298-439)||(28696261-28696402)
chr8 (151-308)||(12729344-12729502)
chr8 (319-439)||(12729189-12729309)
chr8 (67-147)||(12729541-12729621)
chr8 (55-147)||(44729228-44729320)
chr8 (69-121)||(28696007-28696059)
[»] chr1 (11 HSPs)
chr1 (151-309)||(49053745-49053905)
chr1 (145-309)||(49061325-49061491)
chr1 (311-417)||(17458239-17458345)
chr1 (55-147)||(49053944-49054036)
chr1 (299-356)||(10917415-10917470)
chr1 (315-397)||(49053631-49053713)
chr1 (55-147)||(49061524-49061616)
chr1 (299-346)||(52282180-52282226)
chr1 (315-397)||(49061211-49061293)
chr1 (310-419)||(50059322-50059430)
chr1 (20-56)||(48366509-48366545)
[»] chr2 (6 HSPs)
chr2 (309-431)||(14219075-14219197)
chr2 (315-435)||(34681294-34681414)
chr2 (202-302)||(14218942-14219043)
chr2 (92-123)||(30283756-30283787)
chr2 (310-356)||(14891601-14891647)
chr2 (23-51)||(16272155-16272183)
[»] chr4 (10 HSPs)
chr4 (298-432)||(24129520-24129654)
chr4 (315-442)||(1516526-1516653)
chr4 (307-442)||(1494959-1495095)
chr4 (298-433)||(48780039-48780174)
chr4 (321-439)||(20251195-20251312)
chr4 (150-263)||(20251408-20251523)
chr4 (323-397)||(1533060-1533134)
chr4 (55-120)||(48779734-48779799)
chr4 (22-56)||(18670553-18670587)
chr4 (145-266)||(24391830-24391951)
[»] chr7 (8 HSPs)
chr7 (307-437)||(12239809-12239939)
chr7 (151-304)||(12239628-12239782)
chr7 (202-442)||(24870232-24870478)
chr7 (300-419)||(1840469-1840589)
chr7 (55-123)||(12239497-12239565)
chr7 (369-432)||(24533212-24533275)
chr7 (226-309)||(24871385-24871468)
chr7 (98-147)||(24870567-24870616)
[»] scaffold0007 (3 HSPs)
scaffold0007 (151-302)||(217708-217861)
scaffold0007 (298-387)||(217602-217689)
scaffold0007 (310-394)||(215732-215816)
[»] chr6 (3 HSPs)
chr6 (299-439)||(28612324-28612464)
chr6 (145-302)||(28612144-28612303)
chr6 (64-147)||(11932104-11932187)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 57 - 443
Target Start/End: Complemental strand, 36203297 - 36202910
Alignment:
Q  57 atgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaatagaatcc 155  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||    
T  36203297 atgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagttcgattcgtcccc-accagttatgccaaccggatgcaatagaatcc 36203199  T
Q  156 ttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaagagaacgaata 254  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36203198 ttgacgtgacttgcacgttcacatcaagtgtatctgcaatggtagcttacaaaataaagttctgacaaattctctcgtacactaaagaagagaacgaata 36203099  T
Q  255 atttagtataattttcggcagaatttagactcacagcaatgtgattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaaga 354  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36203098 atttagtataattttcggcagaatttagactcacaccaatgtgattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaaga 36202999  T
Q  355 gaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacactttttctctaaaaggtctcttttt 443  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36202998 gaaataaccctttaaaagagtttgttcatgaatggttacattgattcaattgtcaagcattacaccttttctctaaaaggtctcttttt 36202910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 311 - 424
Target Start/End: Complemental strand, 29006398 - 29006285
Alignment:
Q  311 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||  |||||||| |||||||||||||| |||||||| |||||| || ||    
T  29006398 aaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggttacattgcttcaatcgtaaa 29006299  T
Q  411 gcattacacttttt 424  Q
     |||||||||||||    
T  29006298 acattacacttttt 29006285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 299 - 418
Target Start/End: Original strand, 9851621 - 9851740
Alignment:
Q  299 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 398  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||  || | |||||||||| ||||||| | | ||||     
T  9851621 ttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagagtttgtttatgaatggtcagattgc 9851720  T
Q  399 ttcaattgtcaagcattaca 418  Q
    ||||||||||||||| ||||    
T  9851721 ttcaattgtcaagcaataca 9851740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 29006603 - 29006447
Alignment:
Q  145 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagctt-acaaaataaagttctgacaa-ttctctcgtacactaaaga 242  Q
    |||| ||||||||||| |||| | ||| |||||| |||| |||||| ||| | ||| || ||| |||||||||||| ||| || |||||| ||||| | |    
T  29006603 caatggaatccttgacatgacatacacattcacaccaagcgtatcgtcaatgttagttttacagaataaagttctgtcaacttatctcgtgcactagaaa 29006504  T
Q  243 agagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgat 299  Q
    | |||| |||| |||||||||||||||  ||||||||||||||||||  ||||||||    
T  29006503 aaagaatgaatgatttagtataatttttagcagaatttagactcacaagaatgtgat 29006447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 9851319 - 9851381
Alignment:
Q  55 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattc 117  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||| |||| |||| ||||    
T  9851319 tgatgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggttcaattc 9851381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 433
Target Start/End: Original strand, 11042983 - 11043087
Alignment:
Q  329 gagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacactttttctct 428  Q
    |||||||| ||||| ||||||| ||| ||  ||||  || ||||||||||||||||||||  || ||||||| ||| | ||| |||||||| ||||||||    
T  11042983 gagaaactcatgtcctttggtgtagataatcaaccctttgaaagagtttgttcatgaatggctagattgattaaatggacaaacattacaccttttctct 11043082  T
Q  429 aaaag 433  Q
    |||||    
T  11043083 aaaag 11043087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 15205256 - 15205199
Alignment:
Q  348 gtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaatt 405  Q
    ||||| ||||||||||  ||  |||||||||||||||||||||||||||| |||||||    
T  15205256 gtgaatagaaataaccatttgtaagagtttgttcatgaatgattacattgcttcaatt 15205199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 29006747 - 29006660
Alignment:
Q  34 aaagatgaacatgatgaattgtgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgcccc 122  Q
    |||||||| || |||||||  |||||||  ||||||||||||| ||  ||||||||| | ||||||||| |||| ||||||||||||||    
T  29006747 aaagatgatcaagatgaata-tgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgcccc 29006660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 28270773 - 28270806
Alignment:
Q  308 tccaaagtgtctctatttatagagaaacttatgt 341  Q
    |||||||| |||||||||||||||||||||||||    
T  28270773 tccaaagtatctctatttatagagaaacttatgt 28270806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 2022669 - 2022705
Alignment:
Q  20 atcaagaagatgataaagatgaacatgatgaattgtg 56  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  2022669 atcaagaagatgatgaagatgaacatgatgaaatgtg 2022705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 140 - 307
Target Start/End: Complemental strand, 52653896 - 52653728
Alignment:
Q  140 ggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaattct-ctcgtacacta 238  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||| ||||| | ||||| |||||    
T  52653896 ggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcgacaatggtagtttacagaataaagttctgtcaattttcctcgtgcacta 52653797  T
Q  239 aagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtc 307  Q
     |||| || | |||| |||||||||||||||| |||||||||| ||||||| |||||| ||||||||||    
T  52653796 gagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatgtaattttctgtc 52653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 33709945 - 33709782
Alignment:
Q  147 atagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgac-aattctctcgtacactaaagaaga 245  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||| ||||| ||||| |||||||||||| | |||||||| || ||||| |||| |    
T  33709945 atagaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttacagaataaagttctgtcaaattctctggtgcactagagaaaa 33709846  T
Q  246 gaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtctc 309  Q
    ||| |||| |||||||||||||||||||| |||||||||||||   |||||||| |||| ||||    
T  33709845 gaaagaatgatttagtataattttcggcaaaatttagactcaccagaatgtgatattctatctc 33709782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 299 - 435
Target Start/End: Complemental strand, 52653712 - 52653576
Alignment:
Q  299 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 398  Q
    ||||||| ||||||||||||| | | ||||||||||||| |||| ||||||||||||| | ||||  ||||||||||||||||||||||| ||||||||     
T  52653712 ttttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgc 52653613  T
Q  399 ttcaattgtcaagcattacactttttctctaaaaggt 435  Q
     ||||||||||| || ||||| ||||| |||||||||    
T  52653612 atcaattgtcaaacaatacaccttttcactaaaaggt 52653576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 308
Target Start/End: Original strand, 40574317 - 40574477
Alignment:
Q  150 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caacggtagcttacaaaataaagttctgacaatt-ctctcgtacactaaagaagaga 247  Q
    ||||| |||||||||||||||| ||||||  ||| ||||| | ||| | ||| ||||| |||||||||||| ||||| ||||||| ||||| |||| |||    
T  40574317 gaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactagagaaaaga 40574416  T
Q  248 acgaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtct 308  Q
    | |||| ||||| ||| |||||||||||||||| ||||||||  ||||||||||| |||||    
T  40574417 aagaatgatttaatattattttcggcagaattttgactcacaagaatgtgattttgtgtct 40574477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 442
Target Start/End: Complemental strand, 33709752 - 33709617
Alignment:
Q  299 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 398  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||  || ||||| |||||          ||||||||     
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctttggtgaagggaaagaaccctttgaaagattttgt----------ttacattgc 33709663  T
Q  399 ttcaattgtcaagcattacac--tttttctctaaaaggtctctttt 442  Q
    ||||||||| |||||||||||  ||||| | |||||||||||||||    
T  33709662 ttcaattgtaaagcattacaccttttttttataaaaggtctctttt 33709617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 52654016 - 52653924
Alignment:
Q  55 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 147  Q
    ||||||| |||||||||||||||||  ||||||||||| |||||||||||||| |||| ||||| ||| ||||| |||||||||||||||||||    
T  52654016 tgatgaagtgtgcacataaattccaaagcgtgtgtgggacacactaacctttaggttcaattcg-ccctcaccagttatgccaaccggatgcaa 52653924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 439
Target Start/End: Original strand, 50914636 - 50914727
Alignment:
Q  348 gtgaagagaaataacctattaaaagagtttgtt-catgaatgattacattgattcaattgtcaagcattacactttttctctaaaaggtctct 439  Q
    ||||||||||| ||||| ||  ||||||||||| |||||||| || ||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  50914636 gtgaagagaaaaaacct-ttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctct 50914727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 419
Target Start/End: Complemental strand, 16729721 - 16729628
Alignment:
Q  324 ttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacac 419  Q
    ||||||||||| | ||||| ||||||||||||||| ||| | |||||||||||| ||||||||| ||||||||| |||||| |||||| |||||||    
T  16729721 ttatagagaaagt-atgtcttttggtgaagagaaacaac-tcttaaaagagtttcttcatgaattattacattgcttcaatagtcaagtattacac 16729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 31362294 - 31362407
Alignment:
Q  197 gtagcttacaaaataaagttctgacaattctc-tcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatg 295  Q
    |||| |||||||||||||||||| ||||| || |||| ||||||| || | ||  || |||||||||| ||||||| |||||||| ||||||||  ||||    
T  31362294 gtagtttacaaaataaagttctgtcaattttcctcgtgcactaaaaaaaataaaaaaaaatttagtattattttcgacagaattttgactcacaagaatg 31362393  T
Q  296 tgattttctgtctc 309  Q
    ||||||| ||||||    
T  31362394 tgattttttgtctc 31362407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 33710072 - 33709981
Alignment:
Q  55 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 147  Q
    ||||||| ||||||| |||||||||  ||||||||||| |||||||||||||| | |||||||  || |||||| ||||| |||||||||||||    
T  33710072 tgatgaagtgtgcac-taaattccaaagcgtgtgtgggacacactaacctttaggatcgattc-acctccaccagttatgtcaaccggatgcaa 33709981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 298 - 439
Target Start/End: Original strand, 28696261 - 28696402
Alignment:
Q  298 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 397  Q
    ||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||  ||| ||||||||||||||||||| ||||||||    
T  28696261 attttctgcatccaaagtgtctctatttatggagaaacttatgttctttggtgaagagaaacatccctttagaagagtttgttcatgaatggttacattg 28696360  T
Q  398 attcaattgtcaagcattacactttttctctaaaaggtctct 439  Q
     ||||||||| ||||||||||| ||||||||||||| |||||    
T  28696361 cttcaattgttaagcattacacattttctctaaaagatctct 28696402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 151 - 308
Target Start/End: Complemental strand, 12729502 - 12729344
Alignment:
Q  151 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaatt-ctctcgtacactaaagaagagaac 249  Q
    |||||||||| |||||||||| |||||| ||||  |||||||||  |||| ||||  |||||||||||| ||||| ||||||| ||||| |||| ||||     
T  12729502 aatccttgacatgacttgcacattcacaccaagcatatcgacaattgtagtttactgaataaagttctgtcaatttctctcgtgcactagagaaaagaaa 12729403  T
Q  250 gaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtct 308  Q
    |||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||    
T  12729402 gaattatttagtataattttcggcagaattttgacacacaacaatgtgattttctgtct 12729344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 319 - 439
Target Start/End: Complemental strand, 12729309 - 12729189
Alignment:
Q  319 tctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattaca 418  Q
    |||||||| ||||||| ||||||| | ||||||||||||| |||   ||| ||||||||| ||||||||| ||| |||| |||||||||| |||||||||    
T  12729309 tctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctcatgaatggttatattgcttcaattgtcgagcattaca 12729210  T
Q  419 ctttttctctaaaaggtctct 439  Q
    | |||||||||||||||||||    
T  12729209 ccttttctctaaaaggtctct 12729189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 12729621 - 12729541
Alignment:
Q  67 cacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 147  Q
    ||||| |||||||  | ||||||||| |||||||||||||| || ||||||| || |||||| |||||||||||||||||||    
T  12729621 cacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcg-cctccaccagttatgccaaccggatgcaa 12729541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 44729320 - 44729228
Alignment:
Q  55 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccaccattatgccaaccggatgcaa 147  Q
    |||||||  ||||||||||||||||  |||||||||||  ||||||||||||| |||| |||| ||||      |||||||||||||||||||    
T  44729320 tgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcacccctgcgagttatgccaaccggatgcaa 44729228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 28696007 - 28696059
Alignment:
Q  69 cataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccc 121  Q
    |||||||||||  ||||||||||| ||||||||| |||| ||| |||||||||    
T  28696007 cataaattccaaagcgtgtgtgggacacactaacttttaggtttgattcgccc 28696059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 151 - 309
Target Start/End: Complemental strand, 49053905 - 49053745
Alignment:
Q  151 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaagagaac 249  Q
    ||||||||||||||||||||| |||||| ||||  ||||||||| ||||| |||||||||||||||||| ||| ||| ||||| ||||| |||||||||     
T  49053905 aatccttgacgtgacttgcacattcacaccaagcatatcgacaatggtagtttacaaaataaagttctgccaatttccctcgtgcactagagaagagaaa 49053806  T
Q  250 gaataatttagtataa-ttttcggcagaatttagactcacagcaatgtgattttctgtctc 309  Q
    |||| ||||||||||| |||| |||||||||  ||| |||| |||||||||||| ||||||    
T  49053805 gaatgatttagtataattttttggcagaattatgacacacaacaatgtgattttatgtctc 49053745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 49061491 - 49061325
Alignment:
Q  145 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaa 243  Q
    |||| ||||||||||||||| |||||| |||||| |||   ||||||||| ||||| ||||| ||||||||| || ||| ||| ||||| ||||| ||||    
T  49061491 caatggaatccttgacgtgatttgcacattcacaccaaacatatcgacaatggtagtttacagaataaagttttgtcaatttccctcgtgcactagagaa 49061392  T
Q  244 gagaacgaataatttagtataa-ttttcggcagaatttagactcacagcaatgtgattttctgtctc 309  Q
     |||| |||| ||||||||||| ||||||||||||||  ||| |||| |||||||||||| ||||||    
T  49061391 aagaaagaatgatttagtataatttttcggcagaattatgacacacaacaatgtgattttatgtctc 49061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 17458345 - 17458239
Alignment:
Q  311 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaa 410  Q
    ||||| |||| ||||||||| ||||||||||| ||||||||||||||| |||   || ||||| ||||||| |||||| ||||||||  | |||||||||    
T  17458345 aaagtatctcaatttatagataaacttatgtcctttggtgaagagaaacaactacttgaaagaatttgttcttgaatggttacattgcatgaattgtcaa 17458246  T
Q  411 gcattac 417  Q
     ||||||    
T  17458245 acattac 17458239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 49054036 - 49053944
Alignment:
Q  55 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 147  Q
    ||||||| ||| |||||||||||||  |||||||||||  ||||||||||||| ||||||||||| |||||||| |||| ||||| ||||||||    
T  49054036 tgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcgattcgc-ccccaccagttataccaactggatgcaa 49053944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 10917470 - 10917415
Alignment:
Q  299 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagaga 356  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| ||| |||||||||    
T  10917470 ttttctgcctccaaagtgtct--atttatagagaaacttatgtcctttagtgaagaga 10917415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 49053713 - 49053631
Alignment:
Q  315 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 397  Q
    ||||| |||||||| | ||||||||||| ||||||||||||| | || |  || |||||||||||| ||||||| ||||||||    
T  49053713 tgtctatatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaagagtttgtttatgaatggttacattg 49053631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 49061616 - 49061524
Alignment:
Q  55 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 147  Q
    ||||||| ||||||||||||||| |  |||||||||||  ||||||  ||||| ||||||||||| |||||||| ||||||||||  |||||||    
T  49061616 tgatgaagtgtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggttcgattcgc-ccccaccagttatgccaactagatgcaa 49061524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 52282180 - 52282226
Alignment:
Q  299 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcattt 346  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  52282180 ttttctgtctc-aaagtgtctctatttatagataaatttatgtcattt 52282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 397
Target Start/End: Complemental strand, 49061293 - 49061211
Alignment:
Q  315 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 397  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| | ||    || ||||| |||||| ||||||| ||||||||    
T  49061293 tgtctctatttatatagaaacttatgtcctttcgtgaagagacacaattatttgaaagaatttgtttatgaatggttacattg 49061211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 419
Target Start/End: Complemental strand, 50059430 - 50059322
Alignment:
Q  310 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtca 409  Q
    |||||||||| |||||||||| || |||||||| ||| ||||| ||||| | | | ||||||||| ||||| | ||||| |||||||| ||  ||  |||    
T  50059430 caaagtgtctttatttatagaaaatcttatgtcttttagtgaacagaaaca-ctttttaaaagagcttgtttacgaatggttacattgctttgatgttca 50059332  T
Q  410 agcattacac 419  Q
    ||||||||||    
T  50059331 agcattacac 50059322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 48366545 - 48366509
Alignment:
Q  20 atcaagaagatgataaagatgaacatgatgaattgtg 56  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  48366545 atcaagaagatgatgaagatgaacatgatgaagtgtg 48366509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 14219075 - 14219197
Alignment:
Q  309 ccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtc 408  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||   || |||||||| ||||||||  |||||||||| |||||||||     
T  14219075 ccaaagtgtctctatttatagagaaacttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaccgattacattgcttcaattgta 14219174  T
Q  409 aagcattacactttttctctaaa 431  Q
    ||||||| ||| |||||||||||    
T  14219175 aagcattgcacattttctctaaa 14219197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 435
Target Start/End: Original strand, 34681294 - 34681414
Alignment:
Q  315 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcat 414  Q
    |||| ||||||||||||||| ||||||| ||||| ||||| ||| |||   ||  |||||||||||||| |||| | |||||| |||||||||||| |||    
T  34681294 tgtccctatttatagagaaatttatgtcttttggggaagaaaaacaactcttttgaagagtttgttcatcaatggtaacattgcttcaattgtcaaacat 34681393  T
Q  415 tacactttttctctaaaaggt 435  Q
    |||||||||||||||||||||    
T  34681394 tacactttttctctaaaaggt 34681414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 14218942 - 14219043
Alignment:
Q  202 ttacaaaataaagttctgacaattctc-tcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgatt 300  Q
    |||||||||||||||||  ||||| || |||| ||||| |||| |||| |||| ||||||||| |||||  ||| ||||| ||||||||  |||||||||    
T  14218942 ttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgatt 14219041  T
Q  301 tt 302  Q
    ||    
T  14219042 tt 14219043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 30283787 - 30283756
Alignment:
Q  92 gccacactaacctttaagttcgattcgccccc 123  Q
    ||||||||||||||||||||||||||||||||    
T  30283787 gccacactaacctttaagttcgattcgccccc 30283756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 14891647 - 14891601
Alignment:
Q  310 caaagtgtctctatttatagagaaacttatgtcatttggtgaagaga 356  Q
    ||||||||||||| ||||||| |||| |||||||||||||| |||||    
T  14891647 caaagtgtctctacttatagaaaaacatatgtcatttggtgcagaga 14891601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 16272155 - 16272183
Alignment:
Q  23 aagaagatgataaagatgaacatgatgaa 51  Q
    |||||||||||||||||||||||||||||    
T  16272155 aagaagatgataaagatgaacatgatgaa 16272183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 298 - 432
Target Start/End: Original strand, 24129520 - 24129654
Alignment:
Q  298 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 397  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||||  ||  ||||||||||||||||||| ||||||||    
T  24129520 attttttgcctccagagtgtctctatttatagagaaacttatgtcatttggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattg 24129619  T
Q  398 attcaattgtcaagcattacactttttctctaaaa 432  Q
     ||||||| ||||||| ||||| ||| ||| ||||    
T  24129620 cttcaattatcaagcaatacacctttcctccaaaa 24129654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 442
Target Start/End: Original strand, 1516526 - 1516653
Alignment:
Q  315 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcat 414  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||  || ||||| |||||||||||||| ||| ||||  ||| || | |||||     
T  1516526 tgtctctatttctagagaaacttatgtcatttggtgaacggaaataaccctttgaaagattttgttcatgaatggttatattgcgtcatttctaaagcac 1516625  T
Q  415 tacactttttctctaaaaggtctctttt 442  Q
    ||||| |||||||||||| |||||||||    
T  1516626 tacaccttttctctaaaatgtctctttt 1516653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 442
Target Start/End: Original strand, 1494959 - 1495095
Alignment:
Q  307 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaa-taacctattaaaagagtttgttcatgaatgattacattgattcaatt 405  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||  ||||  ||||| | |||  | |||||||||||||| ||| |||| ||||| |    
T  1494959 ctccaaaatgtctctttttatagagaaacttatgtcatttggtgaacggaaacaaacctttgaaagaattttgttcatgaatggttatattgcttcaact 1495058  T
Q  406 gtcaagcattacactttttctctaaaaggtctctttt 442  Q
    || |||| |||||| ||||||||||| ||||||||||    
T  1495059 gtaaagctttacaccttttctctaaatggtctctttt 1495095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 298 - 433
Target Start/End: Original strand, 48780039 - 48780174
Alignment:
Q  298 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 397  Q
    |||||||| ||||||||| ||| |||||||||| ||||| | ||| ||||||| ||||||| ||||| | |||||| ||| |||||||||  ||| ||||    
T  48780039 attttctgcctccaaagtatctttatttatagataaactcaagtcttttggtgtagagaaacaacctttgaaaagaatttattcatgaatagttatattg 48780138  T
Q  398 attcaattgtcaagcattacactttttctctaaaag 433  Q
     |||||||||||| ||||| || |||||||||||||    
T  48780139 cttcaattgtcaaacattataccttttctctaaaag 48780174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 439
Target Start/End: Complemental strand, 20251312 - 20251195
Alignment:
Q  321 tatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattgtcaagcattacact 420  Q
    |||||||||||||||||||||| |||||| |||| ||| |||   |||| |||||| ||||||||||  |||||||| ||||||| |||| || ||||||    
T  20251312 tatttatagagaaacttatgtcctttggtaaagaaaaacaactatttaagagagtt-gttcatgaatagttacattgtttcaattatcaaacaatacact 20251214  T
Q  421 ttttctctaaaaggtctct 439  Q
    ||||||||||||| |||||    
T  20251213 ttttctctaaaagatctct 20251195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 263
Target Start/End: Complemental strand, 20251523 - 20251408
Alignment:
Q  150 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaagaga 247  Q
    ||||| |||| ||| |||| || ||||||||||||||||||| ||| | ||| ||||| |||||||||||| ||| ||||||||| ||||| |||| |||    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgtgcactacagaaaaga 20251424  T
Q  248 acgaataatttagtat 263  Q
    |  ||| |||||||||    
T  20251423 aataatgatttagtat 20251408  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 1533060 - 1533134
Alignment:
Q  323 tttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattg 397  Q
    ||||||||||||||||||||||||| ||||| |||| ||||  || ||||| ||||||||| |||| ||| ||||    
T  1533060 tttatagagaaacttatgtcatttgatgaagggaaacaaccctttgaaagattttgttcataaatggttatattg 1533134  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 48779734 - 48779799
Alignment:
Q  55 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgcc 120  Q
    ||||||| |||||| ||||||| ||  |||||||||||  ||||||||||||| ||||||||||||    
T  48779734 tgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcc 48779799  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 18670553 - 18670587
Alignment:
Q  22 caagaagatgataaagatgaacatgatgaattgtg 56  Q
    |||||||||||||||||||||||||||||| ||||    
T  18670553 caagaagatgataaagatgaacatgatgaagtgtg 18670587  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 24391951 - 24391830
Alignment:
Q  145 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaatt-ctctcgtacactaaagaa 243  Q
    |||| |||||||||  ||||||||||| | |||| |||  |||||||||| | ||| ||||| ||||||||| || ||||| ||||| | ||||| ||||    
T  24391951 caatggaatccttggtgtgacttgcacat-cacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttctctcatgcactagagaa 24391853  T
Q  244 gagaacgaataatttagtataat 266  Q
     |||| |||| ||||||||||||    
T  24391852 aagaaagaatgatttagtataat 24391830  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 12239809 - 12239939
Alignment:
Q  307 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattgattcaattg 406  Q
    ||||||||||||| ||||||||||||||||||| || |||| | |||||    ||||  || |||||||||||||||||||| ||||||||  |||||||    
T  12239809 ctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaagagtttgttcatgaatggttacattgcatcaattg 12239908  T
Q  407 tcaagcattacactttttctctaaaaggtct 437  Q
    ||||||| ||||||||||| |||||||||||    
T  12239909 tcaagcaatacactttttcactaaaaggtct 12239939  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 304
Target Start/End: Original strand, 12239628 - 12239782
Alignment:
Q  151 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaacggtagcttacaaaataaagttctgacaa-ttctctcgtacactaaagaagagaac 249  Q
    ||||||||||||||||||||| |||||| |||| |||||||||| ||||| || || ||||||||| || ||| || ||| ||| |||| |||  ||||     
T  12239628 aatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttccagaataaagttttgtcaatttatctagtatactagagataagaaa 12239727  T
Q  250 gaataatttagtataattttcggcagaatttagactcacagcaatgtgattttct 304  Q
    |||||||||| ||| |||||||||||||||   || |||| ||||||||||||||    
T  12239728 gaataatttaatattattttcggcagaattctaacacacaacaatgtgattttct 12239782  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 442
Target Start/End: Complemental strand, 24870478 - 24870232
Alignment:
Q  202 ttacaaaataaagttctgacaattct-ctcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtga-- 298  Q
    ||||| |||||||||||  ||||| | ||||| ||||| |||| |||| || | ||||||||| ||||| |||||||||| | ||||||  ||| |||      
T  24870478 ttacataataaagttctatcaatttttctcgtgcactagagaaaagaaagacttatttagtattatttttggcagaattttgtctcacaagaatctgaca 24870379  T
Q  299 ---ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacat 395  Q
       |||| || |||||||||||||||||||||||||||| ||||||| |   |||||||||||||||   ||| ||||||||||| || || | ||| |     
T  24870378 ctcttttatgcctccaaagtgtctctatttatagagaaaattatgtcttacagtgaagagaaataactatttagaagagtttgttaataaacggttagac 24870279  T
Q  396 tgattcaattgtcaagcattacactttttctctaaaaggtctctttt 442  Q
    || |||| |  ||| |||||||||  |||| ||||||||||| ||||    
T  24870278 tgcttcattgatcacgcattacaccctttcactaaaaggtctatttt 24870232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 1840589 - 1840469
Alignment:
Q  300 tttctgtctccaaagtgtctctatttatagagaaacttatgt-catttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 398  Q
    |||||| ||||||| ||||||||||||||||||||||||||| | |||| |||||| | | ||| | ||| |||| |||||||||||||| ||||| |      
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtccttttgatgaagaaagacaactttttagaagaatttgttcatgaatggttacaatac 1840490  T
Q  399 ttcaattgtcaagcattacac 419  Q
    || |||| ||||| |||||||    
T  1840489 ttgaattatcaagaattacac 1840469  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 12239497 - 12239565
Alignment:
Q  55 tgatgaattgtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccc 123  Q
    ||||||| |||||||||||||| ||  ||||||||||| |||| ||||||||| |||||||||||||||    
T  12239497 tgatgaagtgtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcgattcgccccc 12239565  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Complemental strand, 24533275 - 24533212
Alignment:
Q  369 aaagagtttgttcatgaatgattacattgattcaattgtcaagcattacactttttctctaaaa 432  Q
    |||| ||||||||||||||| |||||||| | ||||||| || |||||||  ||||||||||||    
T  24533275 aaagtgtttgttcatgaatggttacattgctacaattgttaaacattacatattttctctaaaa 24533212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 24871468 - 24871385
Alignment:
Q  226 ctctcgtacactaaagaagagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgattttctgtctc 309  Q
    ||||||| |||| ||||| |||  |||| ||||| ||| |||||||||||||||| ||||||||  |||||||| ||| |||||    
T  24871468 ctctcgtgcacttaagaaaagagagaatgatttaatattattttcggcagaattttgactcacaataatgtgatattcggtctc 24871385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 24870616 - 24870567
Alignment:
Q  98 ctaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 147  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  24870616 ctaacctttaagttcgattcg-cccctaccagttatgccaaccggatgcaa 24870567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 302
Target Start/End: Complemental strand, 217861 - 217708
Alignment:
Q  151 aatccttgacgtgacttgcacgttcacatcaagtgtatcga-caacggtagcttacaaaataaagttctgacaatt-ctctcgtacactaaagaagagaa 248  Q
    ||||||||| | ||||||||| |||||| |||||||||||| ||| ||||| ||||||||||| |||||| ||||| |||||||  |||| |||| ||||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaa 217762  T
Q  249 cgaataatttagtataattttcggcagaatttagactcacagcaatgtgatttt 302  Q
     |||| |||||| || |||||||||||||||  ||| |||| ||||||||||||    
T  217761 agaattatttagaattattttcggcagaattctgacacacaacaatgtgatttt 217708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 217689 - 217602
Alignment:
Q  298 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaat 387  Q
    |||||||| ||| |||||||||  |||||||||||||||||||||||||||| |||| ||| ||||| || ||||||||||| |||||||    
T  217689 attttctgcctctaaagtgtct--atttatagagaaacttatgtcatttggtaaagataaacaaccttttgaaagagtttgtccatgaat 217602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 215816 - 215732
Alignment:
Q  310 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattaca 394  Q
    |||||||||||| | |||||| ||||||||||| |||||||||||||||| |||  ||||| |  |||||| ||||||| |||||    
T  215816 caaagtgtctctgtctatagaaaaacttatgtcctttggtgaagagaaatgaccctttaaatggatttgtttatgaatggttaca 215732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 439
Target Start/End: Original strand, 28612324 - 28612464
Alignment:
Q  299 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataacctattaaaagagtttgttcatgaatgattacattga 398  Q
    ||||||| ||| ||||||||| | |||||| ||||||||||||||||||||||||| ||| || |  ||  ||||||||||||||||||  ||| ||||     
T  28612324 ttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 28612423  T
Q  399 ttcaattgtcaagcattacactttttctctaaaaggtctct 439  Q
    |||||||||||| || ||||| ||| |||||||||| ||||    
T  28612424 ttcaattgtcaaacaatacacctttgctctaaaaggcctct 28612464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 302
Target Start/End: Original strand, 28612144 - 28612303
Alignment:
Q  145 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caacggtagcttacaaaataaagttctgacaattctc-tcgtacactaaaga 242  Q
    |||| ||||||||||||||||||| || |||||| ||||  |||||  ||| |||||  ||||||| || |||||| |||||| | |||| ||||| |||    
T  28612144 caatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcactagaga 28612243  T
Q  243 agagaacgaataatttagtataattttcggcagaatttagactcacagcaatgtgatttt 302  Q
      |||| |||| |||||||||||||||||||||||||| ||||||||  |||||||||||    
T  28612244 taagaaagaatgatttagtataattttcggcagaatttcgactcacaagaatgtgatttt 28612303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 11932187 - 11932104
Alignment:
Q  64 gtgcacataaattccatggcgtgtgtgggccacactaacctttaagttcgattcgccccccacca-ttatgccaaccggatgcaa 147  Q
    ||||||||||||| ||  || ||||| || |||||||||||||| ||| ||||||| |||||| | |||||||||||||||||||    
T  11932187 gtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgc-ccccactagttatgccaaccggatgcaa 11932104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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