View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_14 (Length: 444)
Name: NF18786_high_14
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 290 - 429
Target Start/End: Complemental strand, 13013425 - 13013285
Alignment:
| Q |
290 |
gtgagaaaaagag-tgatttaaatttaatattaaaattaggacgtaggttaaaagtattaaccttattgctgcaaccacgatttggacaatattcttgat |
388 |
Q |
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| T |
13013425 |
gtgagaaaaaaaggtgatttaaatttaatattaaaattaggacgtaggttaaaagtattaaccttattgctgcaaccacgatttggacaatactcttgat |
13013326 |
T |
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| Q |
389 |
caataagaatgggattacccacgttattcatcacaatatct |
429 |
Q |
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| T |
13013325 |
caataagaataggattacccacattattcatcacaatatct |
13013285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 13013614 - 13013450
Alignment:
| Q |
16 |
attaattggcagaaattagattatggtacataagtaaaaagtcatatcaat---tatcagtatttaatatatattttcaatcaatacttataaaatatct |
112 |
Q |
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| T |
13013614 |
attaattgacagaaattagattatggttcataagtaaa---tcatatcaatatttatcagtatttaatatatattttcaatcaatacttat-aaatatct |
13013519 |
T |
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| Q |
113 |
tccgaaattaggtatcctaaaaaagtttagtgaacctaaaataaaaattttacctttttatcatagtttgaatgaaaaa |
191 |
Q |
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| T |
13013518 |
cccaaaattaggtatccta---------agtaaacctaaaatcaaaattttacc-ttttatcatagtttgaatgaaaaa |
13013450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 429
Target Start/End: Complemental strand, 49617110 - 49616993
Alignment:
| Q |
312 |
tttaatattaaaattaggacgtaggttaaaagtattaaccttattgctgcaaccacgatttggacaatattcttgatcaataagaatgggattacccacg |
411 |
Q |
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| T |
49617110 |
tttaatattataattagaatgagggttaaaagtactaacctgattattgcaagcgctgtttggacaatattcttgatcaataacaatgagtttatacaca |
49617011 |
T |
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| Q |
412 |
ttattcatcacaatatct |
429 |
Q |
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| T |
49617010 |
ttattcatcataatatct |
49616993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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