View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_2 (Length: 624)
Name: NF18786_high_2
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 23 - 479
Target Start/End: Original strand, 38014318 - 38014777
Alignment:
| Q |
23 |
aacccaaatacaaggttgcttataagcataacacagtagtgctggtacacattaaaataattccacaaagctatccaaattaccaacttgtcattnnnnn |
122 |
Q |
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| T |
38014318 |
aacccaaatacaaggttgcttataagcataacactgaagtgatggtacacattaaaatacttccacaaagctatccaaattaccaacctgtcattcaaaa |
38014417 |
T |
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| Q |
123 |
nncaaaa---gttttttacttcaaagatgtctgctgcctgccatctgggattgcaaataacacggttggttccgaaggccagacgaagggtacatcacac |
219 |
Q |
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| T |
38014418 |
acaaaaaaaagatttttacttcaaagatgtctgctgcctgccatctgggattgcaaataacacgattggtttcgaaggccggacgaagggtacatcacac |
38014517 |
T |
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| Q |
220 |
ctgaaatatccctttctctccagctgtaatacttctccacgcttaagattttgcatattggagtctccatatgctagagtctccttttttgtgcaagggt |
319 |
Q |
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| T |
38014518 |
ctaaaatatccctttctctccagctgcaatacttctccacgcttaagatttcgcatattggagtctccatatgctagagtctccttttttgtgcaagggt |
38014617 |
T |
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| Q |
320 |
taagcacatcaacgaaattctctcctttctcaagctgcaaacaaagcaaataaaaacataaacagggaagcaagcaggtttgatgtatattaagtatgag |
419 |
Q |
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| T |
38014618 |
taagcacatcagtgaaatcctctccttcctcaagctgcaaacaaagcaaatataaacttaaacagggaagcaagcaggtttgacgtatattaagtatgag |
38014717 |
T |
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| Q |
420 |
tagatgaaatgaacactgaaccaaagtgtccatgcatagggtatgcacttttaagagaat |
479 |
Q |
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| T |
38014718 |
tagataaaatgaacactgaaccaaagtgtctaaccatagggtatgcacttttaagagaat |
38014777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 451 - 614
Target Start/End: Original strand, 38014849 - 38015023
Alignment:
| Q |
451 |
atgcatagggtatgcacttttaagagaatgggatcaggatggacaatat------------ggtgctataaaactagatccatggaaggttcatgaaagg |
538 |
Q |
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| T |
38014849 |
atgcatagggtatccacttttaagagaatgggatcaggatggacagtaataaggacaattaggtgctataaaactagttccatggaaggttcatgaaagg |
38014948 |
T |
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| Q |
539 |
tcagataatagtcgttaacaaattcttataacatatatggtaagatgcacaattgcataaacaccttgcagtataa |
614 |
Q |
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| T |
38014949 |
tcagacaatagccgttaataaattcttataacatttatgg-gagatgcagaattgcataaacaccttacagtataa |
38015023 |
T |
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