View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_20 (Length: 394)
Name: NF18786_high_20
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 47519915 - 47519520
Alignment:
| Q |
1 |
aaggatgtggtgtaatgatgaggtgatggaaaaccatcacacaatatagcacaattaccctatcttcgattttgaaatgg-tgctaaaattcttgtggaa |
99 |
Q |
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| T |
47519915 |
aaggatgcggtgtaatgatgaggtgatggaaaaccatcacacaatagagcacaattaccctatcttcaattttgacatgggtgctaaaattcttgtggaa |
47519816 |
T |
|
| Q |
100 |
gccgaagaggttagtgtcaaattgagatgttctattcttggtaacactaccaccctttgaacatggtgtggaagacactgtttccatgcatggagaatac |
199 |
Q |
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| T |
47519815 |
gctgaagaggttagtgtcaaattgagatgttctattcttggtgacactaccaccctttgaacatgctgttgaagacactgtttccatgcatggagaatac |
47519716 |
T |
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| Q |
200 |
cattcttgtgcttgcgctattgtcgagaatacaatcttttgactatcaaagctgttt----------------aggttggtgactcataaagaaagtgga |
283 |
Q |
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|||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||| |||||||||||| |||||||||||||| |
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| T |
47519715 |
cattcttgtgcttgcgctattgccgaaaatacaatc--ttgagtatcaaagctgttttatagccaaatacaaaaggttggtgactgataaagaaagtgga |
47519618 |
T |
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| Q |
284 |
ggagcagagggaaattcttttacttcctcaagattttaatttgatgcacaaagcgaaacaaatggatacagagacgaatttcaaattagttgaagttg |
381 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47519617 |
ggagcagagggaaattcttttactttctcaagattttactttgatgcagaaagcgaaacaaatggatacaaagacgaatttcaaattagttgaagttg |
47519520 |
T |
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