View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_23 (Length: 371)
Name: NF18786_high_23
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 52476696 - 52476349
Alignment:
| Q |
14 |
acaacaaatcacactcatttttaatattgtgttggttctgcttaatgacatgttgttgaactgatttagttttgcaaaactcagctaagtttttagtatc |
113 |
Q |
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| T |
52476696 |
acaacaaatcacactcatttttaatattgtgttggttctgcttaatgacatgttgttgaactgatttagttttgcaaaactcagctaagtttttagtatc |
52476597 |
T |
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| Q |
114 |
atgatcatttcgtgaatgttgcaacaagttggaacaacctttgagtgattcaaatggtggcaaaatatctttgagaccatggttcagacatatttgcaga |
213 |
Q |
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| T |
52476596 |
atgatcatttcgtgaatgttgcaacaatttggaacaacctttgagtgattcaaatggtggcaaaatatctttgagaccatggttcagacatatttgcaga |
52476497 |
T |
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| Q |
214 |
tatttctcaggaaatggccagctatgaaagatacttttgtgacgagaagcaagaacatagcgtctgcaatattataactcttcacatgtcagtaattaat |
313 |
Q |
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| T |
52476496 |
tatttctcaggaaatggccagctatgaaagatacttttgtgacgagaagcaagaacatatcgtctgcaatattataactcttcacatgtcagtaattaat |
52476397 |
T |
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| Q |
314 |
tgtgataaaatgaaaaatcctaacaaaaattcaacatgaataagaatt |
361 |
Q |
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| T |
52476396 |
tgtgataaaatgaaaaatcctaacaaaaattcaacatgaataagaatt |
52476349 |
T |
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