View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_high_3 (Length: 609)
Name: NF18786_high_3
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 6667906 - 6668238
Alignment:
| Q |
1 |
aaacgaaccagtaaaaaacccaacaaggaaaagagttctatcgtcattccaaagcttcactatgctttcaggtttctctttttacacatttcgtttactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6667906 |
aaacgaaccagtaaaaaacccaacaaggaaaagagttctatcgtcattccaaagcttcactatgctttcaggtttctctttttacacatttcgtttactc |
6668005 |
T |
|
| Q |
101 |
tttcacgtttcttcatttcatatttgaattcctctatttgtgatttaggttaacatattgaaaaacgaaacgaatatatggtgattgatatttagatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6668006 |
tttcacgtttcttcatttcatatttgaattcctctatttgtgatttaggttagcatattgaaaaacgaaacgaatatatggtgattgatatttagatcat |
6668105 |
T |
|
| Q |
201 |
cacaggggagagagatccgtagcggagagcggtgtcggtattggaagctactaatctttggtgattgagattttttcttcaatttgcttgatgaaattta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6668106 |
cacaggggagagagatccgtagcggagagcggtgtcggtattggaagctactaatctttggtgattgagattttttcttcaatttgcttgatgaaattta |
6668205 |
T |
|
| Q |
301 |
ttaaaaaatgattttcatttttagaaaagatgg |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6668206 |
ttaaaaaatgattttcatttttagaaaagatgg |
6668238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 463 - 592
Target Start/End: Original strand, 6668344 - 6668473
Alignment:
| Q |
463 |
ggagctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttttgttgattgtttgctatatacttttaagagattttcag |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
6668344 |
ggagctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttccgttgattgtttgcaatatacttttcagagattttcag |
6668443 |
T |
|
| Q |
563 |
tagtttaacccttaattttaatttcaactt |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6668444 |
tagtttaacccttaattttaatttcaactt |
6668473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 12529723 - 12529663
Alignment:
| Q |
271 |
ttttttcttcaatttgcttgatgaaatttattaaaaaa--tgattttcatttttagaaaag |
329 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||| || | |||||||||||||||| |
|
|
| T |
12529723 |
ttttttgttcaatttgattgatgaaatttaataaaaaaactgttgttcatttttagaaaag |
12529663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 397
Target Start/End: Original strand, 6668249 - 6668277
Alignment:
| Q |
369 |
tttcactttatttaatgttgtagcttcag |
397 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6668249 |
tttcactttatttaatgttgtagcttcag |
6668277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University