View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_40 (Length: 240)
Name: NF18786_high_40
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 21626315 - 21626536
Alignment:
| Q |
19 |
ctccgaaccggatagaattacaattcaacctcattgtgtttattttcaattttttaatagttatttattagacatcttgttcaattgtaattaaacaaat |
118 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21626315 |
ctccgaaccggatagaataacaattcgacctcattgtgtttattttcaattttttaatagttatttattagacatcttgttcaattgtaattaaacaaat |
21626414 |
T |
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| Q |
119 |
tgaatcatgactaagaaagcctcacttgtaggacctcacatcaagtatttaaaacatgggtttgtacannnnnnnngttgtttttctcctttgagcccac |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21626415 |
tgaatcatgactaaggaagcctcacttgtaggacctcacatcaagtatttaaaacatgggtttgtacattttttttgttgtttttctcctttgagcccac |
21626514 |
T |
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| Q |
219 |
ttctgaagcactcatcattact |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
21626515 |
ttctgaagcactcatcattact |
21626536 |
T |
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