View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_high_41 (Length: 240)
Name: NF18786_high_41
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 5329300 - 5329510
Alignment:
| Q |
12 |
gaaaatcacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5329300 |
gaaaatcacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatg |
5329399 |
T |
|
| Q |
112 |
atgaagcgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaacca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5329400 |
atgaagcgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaacca |
5329499 |
T |
|
| Q |
212 |
gagtcagtact |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
5329500 |
gagtcagtact |
5329510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 54775463 - 54775673
Alignment:
| Q |
12 |
gaaaatcacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54775463 |
gaaaatcacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatg |
54775562 |
T |
|
| Q |
112 |
atgaagcgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaacca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54775563 |
atgaagcgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaacca |
54775662 |
T |
|
| Q |
212 |
gagtcagtact |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
54775663 |
gagtcagtact |
54775673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University