View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_high_42 (Length: 239)
Name: NF18786_high_42
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_42 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 33841480 - 33841257
Alignment:
| Q |
16 |
ataacaatgacaaaatcattgaaagccatctcttcaatgctcccccgttgcgtatcggtatcgaaagcatttggtcatcgacattgatcattaaaccata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33841480 |
ataacaatgacaaaatcattgaaagccatctcttcaatgctcccccgttgcgtatcgatatcgaaagcatttggtcatcgacattgatcattaaaccaaa |
33841381 |
T |
|
| Q |
116 |
attggaaggtgttaattttcgcacggtattttaacgtatataccataaaaattaaactatgttctttgtgtgggatcggaaaacaaccattgactctgat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33841380 |
attggaaggtgttaattttcgcacggtattttaacgtatataccataaaaattaaactatgttttttgtgtgagatcggaaaacaaccattgactctgat |
33841281 |
T |
|
| Q |
216 |
tgcatggcgaatatgtgaaaattc |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33841280 |
tgcatggcgaatatgtgaaaattc |
33841257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University