View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_45 (Length: 232)
Name: NF18786_high_45
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 7278806 - 7278606
Alignment:
| Q |
15 |
aatattaaaaggagaattttcttcataatctcttaagctgtgactgatgttaacttcccagggtatgccacttctgattttatgtcattttcccataatt |
114 |
Q |
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| T |
7278806 |
aatattaaattgagaattttcttcataatctctcaagctgtgactgatgttaacttcccagggtatgccacttctgattttatgtcattttcccataatt |
7278707 |
T |
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| Q |
115 |
caggcacagcttccctaagattatgaatgctttccaatgcataatctgcacctttaactctttgtgatgtaccaacctatatgtttcaatcaataaatag |
214 |
Q |
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| T |
7278706 |
caggcacagcttccctaagattatgaatgctttccaatgcataatctgcacctttaactctttgtgatgtaccaacctatatgtttcaatcaataaatag |
7278607 |
T |
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| Q |
215 |
g |
215 |
Q |
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| |
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| T |
7278606 |
g |
7278606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 7301006 - 7301060
Alignment:
| Q |
135 |
ttatgaatgctttccaatgcataatctgcacctttaactctttgtgatgtaccaa |
189 |
Q |
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| T |
7301006 |
ttatggatgctttccaatgcataatctgcaccttgaactttctgtgatgtgccaa |
7301060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 22558168 - 22558279
Alignment:
| Q |
84 |
acttctgattttatgtcattttcccataattcaggcacagcttccctaagattatgaatgctttccaatgcataatctgcacctttaactctttgtgatg |
183 |
Q |
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||||||||||| | ||| |||||||||||| ||||| ||||| ||||| || ||||||||||| || ||||||||||||||||||| ||| |||||| |
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| T |
22558168 |
acttctgatttaagttcagattcccataattctggcactgcttctctaaggttgtgaatgctttctaaggcataatctgcacctttaattctctgtgatt |
22558267 |
T |
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| Q |
184 |
taccaacctata |
195 |
Q |
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|||||||||||| |
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| T |
22558268 |
taccaacctata |
22558279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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