View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_high_46 (Length: 219)

Name: NF18786_high_46
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_high_46
NF18786_high_46
[»] chr6 (4 HSPs)
chr6 (17-202)||(12785701-12785886)
chr6 (17-202)||(12781511-12781696)
chr6 (114-202)||(12792002-12792090)
chr6 (77-194)||(12782270-12782387)
[»] chr4 (7 HSPs)
chr4 (72-198)||(31160039-31160165)
chr4 (72-198)||(31529298-31529424)
chr4 (70-198)||(31030518-31030646)
chr4 (70-198)||(31020637-31020765)
chr4 (70-198)||(31151141-31151268)
chr4 (70-198)||(31488787-31488915)
chr4 (70-198)||(31496142-31496270)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 12785886 - 12785701
Alignment:
Q  17 aaatattatgggttgcaagtttccaagtcgtacaaaagatttggttgagattaattatgacgtgtttgtgagctttagaggcccagacacacgcttcaat 116  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785886 aaatattctgggttgcaagttttcaagtcgtacaaaagatttggttgagattaattatgacgtgtttgtgagctttagaggcccagacacacgcttcaat 12785787  T
Q  117 ttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcagggatgacactaaacttaaaaaaggtgaattcat 202  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12785786 ttcaccgatcatctttttgctgccctacaaagacgaggcattaatgcattcagagatgacactaaacttaaaaaaggtgaattcat 12785701  T

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Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 12781696 - 12781511
Alignment:
Q  17 aaatattatgggttgcaagtttccaagtcgtacaaaagatttggttgagattaattatgacgtgtttgtgagctttagaggcccagacacacgcttcaat 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12781696 aaatattttgggttgcaagtttccaagtcgtacaaaagatttggttgagattaattatgacgtgtttgtgagctttagaggcccagacacacgcttcaat 12781597  T
Q  117 ttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcagggatgacactaaacttaaaaaaggtgaattcat 202  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  12781596 ttcaccgatcatttttgtgctgccctacaaagacgaggcattaatgcattcagagatgacactaaacttaaaaaaggcgaattcat 12781511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 12792090 - 12792002
Alignment:
Q  114 aatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcagggatgacactaaacttaaaaaaggtgaattcat 202  Q
    ||||||||| |||||||||||||||||||||||||| ||| ||| |||| |||||| ||||| || |||||||||||||||||||||||    
T  12792090 aatttcaccgatcatctttttgctgccctacaaagaagagacataaatgaattcagagatgatacaaaacttaaaaaaggtgaattcat 12792002  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 12782387 - 12782270
Alignment:
Q  77 cgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcagggatgac 176  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||  |||||||||||| |||||| ||||||  | | |||  | ||||||| ||||||    
T  12782387 cgtgtttgtgagcttcagaggcacagacacacgtttcaatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgac 12782288  T
Q  177 actaaacttaaaaaaggt 194  Q
    ||||| ||| ||||||||    
T  12782287 actaatcttcaaaaaggt 12782270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 31160165 - 31160039
Alignment:
Q  72 tatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcaggg 171  Q
    |||||||| ||||||||||||||||||| |||||||| |  ||||||  || ||||||||||||||||||| ||||||  ||||||   |||||||||||    
T  31160165 tatgacgtttttgtgagctttagaggccaagacacacacaacaattttgccgatcatctttttgctgcccttcaaagaaaaggcatcgttgcattcaggg 31160066  T
Q  172 atgacactaaacttaaaaaaggtgaat 198  Q
    ||||  |||| || || ||||||||||    
T  31160065 atgattctaacctgaagaaaggtgaat 31160039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 31529424 - 31529298
Alignment:
Q  72 tatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcaggg 171  Q
    |||||||||||| | ||||| |||||  |||||||||| ||||| |||||  ||||||||||| | ||||| |||| | ||||||||  |||||| || |    
T  31529424 tatgacgtgtttatcagcttcagaggagcagacacacgattcaacttcactgatcatcttttttccgccctccaaataagaggcattgttgcatttagag 31529325  T
Q  172 atgacactaaacttaaaaaaggtgaat 198  Q
    |||||||||| ||||| ||||||||||    
T  31529324 atgacactaagcttaagaaaggtgaat 31529298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 31030646 - 31030518
Alignment:
Q  70 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 169  Q
    ||||||| |||||||| | ||||||||||  ||| || |||||||| ||||   ||||||||||||||||||| ||||||  |||||||  |||||| ||    
T  31030646 attatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 31030547  T
Q  170 ggatgacactaaacttaaaaaaggtgaat 198  Q
     || |||||||| ||| ||||||||||||    
T  31030546 agacgacactaatcttcaaaaaggtgaat 31030518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 31020765 - 31020637
Alignment:
Q  70 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 169  Q
    ||||||| |||||||| | ||||||||||  ||| || |||||||| ||||   ||||||||||||||||||| ||||||  |||||||  |||||| ||    
T  31020765 attatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttag 31020666  T
Q  170 ggatgacactaaacttaaaaaaggtgaat 198  Q
     || ||| |||| ||| ||||||||||||    
T  31020665 agacgacgctaatcttcaaaaaggtgaat 31020637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 31151268 - 31151141
Alignment:
Q  70 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 169  Q
    |||||||||||||||| |||||||||||   ||| |||||| |||| |||||  ||||||||||||||||||| ||||||  |  ||||  | |||||||    
T  31151268 attatgacgtgtttgtcagctttagaggtaaagatacacgcctcaacttcactgatcatctttttgctgccctgcaaaga-aaatcattttttcattcag 31151170  T
Q  170 ggatgacactaaacttaaaaaaggtgaat 198  Q
    |||||| ||||| || || ||||||||||    
T  31151169 ggatgatactaagctgaagaaaggtgaat 31151141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 31488787 - 31488915
Alignment:
Q  70 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 169  Q
    |||||||||||||||| | ||| |||||   ||| || |||||||| || ||  ||||||||||||||||||| ||||||  |||||||  ||| || ||    
T  31488787 attatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgtttag 31488886  T
Q  170 ggatgacactaaacttaaaaaaggtgaat 198  Q
     ||||||||||| ||| ||||||||||||    
T  31488887 agatgacactaagcttcaaaaaggtgaat 31488915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 198
Target Start/End: Original strand, 31496142 - 31496270
Alignment:
Q  70 attatgacgtgtttgtgagctttagaggcccagacacacgcttcaatttcaccaatcatctttttgctgccctacaaagacgaggcattaatgcattcag 169  Q
    |||||||||||||||| | |||||||||    ||||| |||  |||||||||  |||||||||||| | || | || |||  |||||||  |||||| ||    
T  31496142 attatgacgtgtttgtcacctttagaggtgaggacactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcatttctgcatttag 31496241  T
Q  170 ggatgacactaaacttaaaaaaggtgaat 198  Q
     ||||||||||| |||  |||||||||||    
T  31496242 agatgacactaatcttccaaaaggtgaat 31496270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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