View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_6 (Length: 505)
Name: NF18786_high_6
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 54 - 294
Target Start/End: Complemental strand, 4215647 - 4215402
Alignment:
| Q |
54 |
ttgactaaatttagggttgtgaatttagagaatccatttccagacacatacacaannnnnnn-acggggaaaggtcgacacggtgggttagcgga----a |
148 |
Q |
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| T |
4215647 |
ttgactaaatttagggttgtgaatttagagaattcatttccagacacatacacaattttttttacggggaaaggtcgacacagtgggttagcggttatca |
4215548 |
T |
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| Q |
149 |
attcacatacatgtcatgttcttgtgtgttagataaatcctagttctcttataccatgtatgttcacacttacgacttcaggaaactcagcctcataatt |
248 |
Q |
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| T |
4215547 |
attcacatacatgtcatgttcttgtgtgttagataaatcctagttctcttataccatgtatgttcaaacttacgacttcaggaaactcagcctcataatt |
4215448 |
T |
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| Q |
249 |
ttgttccatacaagagtcaaacaaacattcaaaccaccaatgtatg |
294 |
Q |
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| T |
4215447 |
ttgttccatacaagagtcaaacaaacattcaaaccaccaatgtatg |
4215402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 290 - 491
Target Start/End: Complemental strand, 4215218 - 4215018
Alignment:
| Q |
290 |
gtatgaagacacactcagaaggttgcatagcagaataaaattctaataatctagttgggatctatgacctgtgtcagtaacttctatattggtgagtgac |
389 |
Q |
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| T |
4215218 |
gtatgaagacacactcagaaggttgcatagcagaataaaattctaataatctagttgggatctatgacctgtgtcagtaacttctatattggtgagtgac |
4215119 |
T |
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| Q |
390 |
aatattagtttttccagatcctacaaatgttgcgcacatcctgtcccgggnnnnnnnnccacattcttggggctttccatctctcagatataatggtaaa |
489 |
Q |
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| T |
4215118 |
aatattagtttttccagatcctataaatgttgcgcacatcctgtccc-ggaaaaaaaaccacattcttggggctttccatctctcagatataatggtaaa |
4215020 |
T |
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| Q |
490 |
ac |
491 |
Q |
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| T |
4215019 |
ac |
4215018 |
T |
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