View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_7 (Length: 502)
Name: NF18786_high_7
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Original strand, 13854413 - 13854878
Alignment:
| Q |
8 |
cgaataaaattccaagcaaaattacctcatgagcctgttatcttaattttcaattttatatttggcattgtttacctacaaattcatgtaaaaacataat |
107 |
Q |
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| T |
13854413 |
cgaattaaattccaagcaaaattacctcatgagcctgttatcttaattttcaattttatatttggcattgtttacctacaaattcatgtaaaaacataat |
13854512 |
T |
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| Q |
108 |
aggattaagttgaaataagataaaatagagaagttagtaacttgaaatgaaaaatttagatatgtggaggaaggtttgccaacctagatgtaaagggggc |
207 |
Q |
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| T |
13854513 |
aggattaagttgaaataagataaaatagaggagctagtaacttgaaatgaaaaatttagatatgtggaggaaggtttgccaacctagatgtaaagggggc |
13854612 |
T |
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| Q |
208 |
ctcggtgttagagatattagattggttaatgttagcctcttagctaagtggtggtggcggctcctacaagatcaaccgtctttgtggaaagaggtgcttg |
307 |
Q |
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| T |
13854613 |
ctcggtgttagagatattagattggttaatgttagcctcttagctaagtggtggtggcggctcctacaagatcaatcgtctttgtggaaagaggtgcttg |
13854712 |
T |
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| Q |
308 |
aagatatttatggacctagggtgagttctaggaccatgatggtggggagaattggttggcttatgcttcaagatggtggaaagatttgatgagtttggag |
407 |
Q |
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| T |
13854713 |
aagatatttatggacctagggtgagttctaggaccatgatggtggggagaattggccggcttatgcttcaagatggtggaaagatttgatgagtttggag |
13854812 |
T |
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| Q |
408 |
gaggtgggtagggttaggtggtgtcgaagggagttgattaggaaggtgggtgatggtaggagctcg |
473 |
Q |
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| T |
13854813 |
gaggtgggtagggttaggtggtttccaagggagttgattaggaaggtgggtgatggtaggagctcg |
13854878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 13873124 - 13873288
Alignment:
| Q |
8 |
cgaataaaattccaagcaaaattacctcatgagcctgttatctta----attttcaattttatatttggcattgtttacctacaaattcatgtaaaaaca |
103 |
Q |
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| T |
13873124 |
cgaattaaattccaagcaa---tacctcatgagtctgttattttatgtaatttccaattttatatttggccttgtttacctacaaattcatgtaaaaaaa |
13873220 |
T |
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| Q |
104 |
-taataggattaagttgaaataagataaaatagagaagttagtaacttgaaatgaaaaatttagatat |
170 |
Q |
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| T |
13873221 |
ataataggattaaattgaaatatgataaaatagaggagctagtaacttgaaattaaaaatttagatat |
13873288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 16663923 - 16663853
Alignment:
| Q |
172 |
tggaggaaggtttgccaacctagatgtaaagggggcctcggtgttagagatattagattggttaatgttag |
242 |
Q |
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| T |
16663923 |
tggaggaaggtgtgtcaacctagaggtaaaggtgggcttggtgtgagagacattaaattggttaatattag |
16663853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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