View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_high_9 (Length: 468)
Name: NF18786_high_9
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 32598280 - 32598651
Alignment:
| Q |
1 |
aatatctctacccaaaattaggttgttacttaggtatgagatcaacggggctttattaccatcttttctgttgaatacttaatatctatcacgttttatt |
100 |
Q |
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| T |
32598280 |
aatatctccacccaaaattaggttgttacttaggtatgagatcaaatgggctttattaccatcttttgtgttgaatacttaatatctatcacgttttatt |
32598379 |
T |
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| Q |
101 |
tttnnnnnnnn-tattatgtattcaacaccaaagatgataaatacatgctagatattaagtgcactaaagtggaaaacagaagaacaagcatgaaatatg |
199 |
Q |
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| T |
32598380 |
ttttaaaaaaaatattatgtattcaacacaaaaaatggtaaatacatgctagatattaagtgcattaaagtaggaaacagaacaataagcatgaaatatg |
32598479 |
T |
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| Q |
200 |
aagtacaacgaggagaaggagctcattcaagagtctgaatattgtattgtactaatctttttaaggttatttgtcgttgattttgtttgaaatggatttt |
299 |
Q |
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| T |
32598480 |
aagtacaatgaggagaagaagctccttcaagagtctgaacatcgtattgtactaatctttttaacgttatttgtcgttgattttgtttgaaatggatttt |
32598579 |
T |
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| Q |
300 |
cttttgtgtacttggtagtgatcagattaaaatagtaccatcacaattctaagcatggtggttgttggattt |
371 |
Q |
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| T |
32598580 |
attttgtgtacttggtagtgatcagattaaaatagtaccatcacaattctaagcatggtggttgttggattt |
32598651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 181 - 374
Target Start/End: Original strand, 32598990 - 32599178
Alignment:
| Q |
181 |
agaacaagcatgaaatatgaagtacaacgaggagaaggagctcattcaagagtctgaatattgtattgtactaatctttttaaggttatttgtcgttgat |
280 |
Q |
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| T |
32598990 |
agaacaagcatggaaaatgaagtacaacgaagaggaggagctccttcaagagtttgaacatggta-----ctaatctttttaacgttatctgtcattgat |
32599084 |
T |
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| Q |
281 |
tttgtttgaaatggattttcttttgtgtacttggtagtgatcagattaaaatagtaccatcacaattctaagcatggtggttgttggatttcta |
374 |
Q |
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| T |
32599085 |
tttgtttgaaatggaatttattttgtgtacttggaagtgatcaaattaaaatagtaccatcacaattctaagcatggtggttgttggatttcta |
32599178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32603431 - 32603517
Alignment:
| Q |
1 |
aatatctctacccaaaattaggttgttacttaggtatgagatcaacggggctttattaccatcttttctgttgaatacttaatatcta |
88 |
Q |
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| T |
32603431 |
aatatatctacccaaaattaggttgttacttgggcatgaga-cctgtgggcttcattaccatcttttgtaatgaatacttaatatcta |
32603517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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