View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_1 (Length: 892)
Name: NF18786_low_1
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 805; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 11 - 873
Target Start/End: Original strand, 30274355 - 30275215
Alignment:
| Q |
11 |
atcatcactatctgcatctctgaaagtagtcatgtaaaggatgcttagagattgtgatcaaaatgttaacatttaacagaacgaagaataataacgaat- |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| || ||| |
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| T |
30274355 |
atcatcactatctgcatctctgaaagtagtcatgtaaaggatgctttgagattgtgatcaaa-tgttaacatttaacagaactaagaataaaaaagaaaa |
30274453 |
T |
|
| Q |
110 |
tttgtatttagaaatcattgtttgcatttacttgaaagggtcaagtccagctgagttaaaggttgatttcatgacagtgagaagaagtaaaggatcagtg |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274454 |
tttgaatttagaaatcattgtttgcatttacttgaaagggtcaagtccagctgagttaaaggttgatttcatgacagtgagaagaagtaaaggatcagtg |
30274553 |
T |
|
| Q |
210 |
gagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagataatggatgagaaattgagaagcatg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274554 |
gagaaatatcctccatacattccaatttccactaggaattgcacatccataataaactgttcaaggaataaagataatggatgagaaattgagaagcatg |
30274653 |
T |
|
| Q |
310 |
ttgttttcaaaactctctcatagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagctaacatgctct |
409 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274654 |
ttgttttcaaaactct--catagtgaaactcaataataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagctaacatgctct |
30274751 |
T |
|
| Q |
410 |
tctgttgttgcatttatcttcttgctcttggaaacccaaataaacatacacaccatcacctctctcagtaattccattaaccaattcacttcgaacacat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274752 |
tctgttgttgcatttatcttcttgctcttggaaacccaaataaacatacacaccatcacctctctcagtaattccattaaccaattcacttcgaacacat |
30274851 |
T |
|
| Q |
510 |
tttcttcttcaagtttttcaattttcctcagctctaaaaataaaacctacacatgacagagactagactttatactaaatataaaagcttacataagcat |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274852 |
tttcttcttcaagtttttcaattttcctcagctctaaaaataaaacctacacatgacagagactagactttatactaaatataaaagcttacataagcat |
30274951 |
T |
|
| Q |
610 |
atatagatgcaaaatcagaagaaactatttgttagggaattatcagtgaaaacatacctgaaaaatggcagaaggcattggattgtggatcatgtttgca |
709 |
Q |
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| T |
30274952 |
atatagatgcaaaatcagaagcaactatttgttagggaattatcagtgaaaacatacctgaaaaatggcagaaggcattggattgtggatcatgtttgca |
30275051 |
T |
|
| Q |
710 |
tcaaattggtcgttatagtgaatagctgaagctatttcatggctactacaagtagacaaagctctgagaattaattgctggcagaacacatttctcaact |
809 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275052 |
tcaaattggtcgttatagtgaatagctgaagctatttcatggctgctacaagtagacaaagctctgagaattaattgctggcagaacacatttctcaact |
30275151 |
T |
|
| Q |
810 |
tattgaagccctcttcaataaacatcagaaaaacatcgagttcatgatgcttaaaaccaactga |
873 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275152 |
tattgaagccctcttcaataaacatcagaaaaacatcgagttcatgatgcttaaaaccaactga |
30275215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 31139852 - 31139891
Alignment:
| Q |
38 |
agtcatgtaaaggatgcttagagattgtgatcaaaatgtt |
77 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||| |
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| T |
31139852 |
agtcatgtaaaggatgctttgagattgtgatcaaattgtt |
31139891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 344 - 501
Target Start/End: Complemental strand, 46270591 - 46270434
Alignment:
| Q |
344 |
aataaacagaagggagggaagtggaaaacctgtttggcttcatcagtttgtaagctaacatgctcttctgttgttgcatttatcttcttgctcttggaaa |
443 |
Q |
| |
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|||||||| |||| |||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||| ||| ||||||||| |
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| T |
46270591 |
aataaacacaaggtagggaaatcaaaaacctgtttggcctcatcagtttgtaagctcacatgctcttctgttattgcattgatctctttgttcttggaaa |
46270492 |
T |
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| Q |
444 |
cccaaataaacatacacaccatcacctctctcagtaattccattaaccaattcacttc |
501 |
Q |
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||||||||||| ||||||||||||||||||| |||||| | | |||||||||||||| |
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| T |
46270491 |
cccaaataaacttacacaccatcacctctcttagtaatcctttcaaccaattcacttc |
46270434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 535 - 629
Target Start/End: Complemental strand, 46270422 - 46270328
Alignment:
| Q |
535 |
cctcagctctaaaaataaaacctacacatgacagagactagactttatactaaatataaaagcttacataagcatatatagatgcaaaatcagaa |
629 |
Q |
| |
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|||||| |||| ||||||| ||| |||||| || |||||| |||| |||||||||| ||| ||| |||||||||| | ||||||||||||||| |
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| T |
46270422 |
cctcagttctagaaataaagcctgcacatggcatagactaaacttcatactaaataccaaatcttgcataagcatacttggatgcaaaatcagaa |
46270328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 46270743 - 46270708
Alignment:
| Q |
152 |
aagtccagctgagttaaaggttgatttcatgacagt |
187 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |
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| T |
46270743 |
aagtccagctgagttaaaagttgatttcatgacagt |
46270708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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