View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_12 (Length: 479)

Name: NF18786_low_12
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_12
NF18786_low_12
[»] chr7 (3 HSPs)
chr7 (222-397)||(38984496-38984671)
chr7 (222-434)||(10582923-10583134)
chr7 (222-344)||(356897-357020)
[»] chr3 (1 HSPs)
chr3 (19-213)||(6786703-6786885)
[»] chr1 (3 HSPs)
chr1 (222-343)||(16465528-16465650)
chr1 (222-312)||(50249155-50249246)
chr1 (340-397)||(50248348-50248405)
[»] chr4 (1 HSPs)
chr4 (324-424)||(6762518-6762618)
[»] chr5 (1 HSPs)
chr5 (218-290)||(1265396-1265469)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 222 - 397
Target Start/End: Original strand, 38984496 - 38984671
Alignment:
Q  222 gcggattcagagggcatcatcacca-ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgt 320  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  38984496 gcggattcagagggcatcatcacccgttccaaaaagggtatttcaaaaccaaaagttttagacccttagttgtc-agggaatgtcttcttttgctcctgt 38984594  T
Q  321 gtaaaagggtttcagcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc 397  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||    
T  38984595 gtaaaagggcttcagcaggtaaaagaataataggttgcaacatgctaatagtacaatcacaattggaattcaaactc 38984671  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 222 - 434
Target Start/End: Original strand, 10582923 - 10583134
Alignment:
Q  222 gcggattcagagggcatcatcacca-ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgt 320  Q
    ||||||||||||||||||||||||  |||||||| || |||||| || ||||||||||| |||||||||||||| ||||||||||||| || ||||||||    
T  10582923 gcggattcagagggcatcatcacccgttccaaaatgggtatttccaaaccaaaagttttggaaccttagttgtctagggaatgtcttccttcgctcctgt 10583022  T
Q  321 gtaaaagggtttcagcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaggagtttcccaaa 420  Q
    ||||||||||||||||||  |||| || |||||| |||| ||| ||||  ||||||||||||||||  |||||||||||| | |||||||| |||||| |    
T  10583023 gtaaaagggtttcagcag--aaaaaaagaataggctgcagcaatctaaaggtacaaacacaaatggcgttcaaactcattctaaaaaggaggttcccata 10583120  T
Q  421 gacatcgccaagta 434  Q
    |||||| |||||||    
T  10583121 gacatcaccaagta 10583134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 344
Target Start/End: Original strand, 356897 - 357020
Alignment:
Q  222 gcggattcagagggcatcatcacca-ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgt 320  Q
    ||||||||||||||||||| ||||  ||||||| ||| |||||| || ||||||||||| |||| |||||| || ||||||||||||| || ||||||||    
T  356897 gcggattcagagggcatcaacacccgttccaaagagggtatttccaaaccaaaagttttggaacattagttatctagggaatgtcttccttcgctcctgt 356996  T
Q  321 gtaaaagggtttcagcaggaaaaa 344  Q
    ||||||||||||||| || |||||    
T  356997 gtaaaagggtttcagaagaaaaaa 357020  T

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Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 6786703 - 6786885
Alignment:
Q  19 tatttgtcatattttaacataaattatctggttttcttgttgatactttcaactggctatgttatatttgtgttatatgccaaatatagatcatcataag 118  Q
    |||||||||||||||||||||||| ||||| ||||||| || || ||||||||||||||||||||||| ||||              |||||||||||||    
T  6786703 tatttgtcatattttaacataaatcatctgtttttcttattcatgctttcaactggctatgttatattggtgt--------------agatcatcataag 6786788  T
Q  119 ttttgcaagcatggaacttctagagtctctaatttctgtaccgaattaatg-aaattattcaaaa-catttcatgacattcttcattttcaagtagg 213  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  6786789 ttttgcaaacatggaacttctagagtctctaatttctgtactgaatcaatgaaaattattcaaaaccatttcatgacattcttcattttcaagtagg 6786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 16465528 - 16465650
Alignment:
Q  222 gcggattcagagggcatcatcac-cattccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttcttttgctcctgt 320  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||||||| | ||  |||||| ||||||| || |||    
T  16465528 gcggattcagagggcatcatcactcgttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttggctagtaaatgtcctcttttgttcttgt 16465627  T
Q  321 gtaaaagggtttcagcaggaaaa 343  Q
     ||||||||||||||||||||||    
T  16465628 ataaaagggtttcagcaggaaaa 16465650  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 50249246 - 50249155
Alignment:
Q  222 gcggattcagagggcatcatcacca-ttccaaaaaggttatttcaaagccaaaagttttagaaccttagttgtccagggaatgtcttctttt 312  Q
    ||||||||| ||||||||||||||  ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  50249246 gcggattcaaagggcatcatcacccgttccaaaaagggtatttcaaaaccaaaagttttagaaccttagttgtctagggaatgtcttctttt 50249155  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 397
Target Start/End: Complemental strand, 50248405 - 50248348
Alignment:
Q  340 aaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactc 397  Q
    ||||||||  ||||| |||||||| ||||| ||||||| |||||||||||| ||||||    
T  50248405 aaaaagaagtataggctgcaacaatctaacggtacaaatacaaatggaatttaaactc 50248348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 6762618 - 6762518
Alignment:
Q  324 aaagggtttcagcaggaaaaagaataataggttgcaacaagctaacagtacaaacacaaatggaattcaaactcatttttaaaaggagtttcccaaagac 423  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||| || | | |||||| || ||||||||    
T  6762618 aaagggtttcagcaggaaaaagaagaataggttgcaacaagctaacggtacaaacacaaatggaatttgaactcgttctcagaaggaggttaccaaagac 6762519  T
Q  424 a 424  Q
    |    
T  6762518 a 6762518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 1265469 - 1265396
Alignment:
Q  218 ttcagcggattcagagggcatcatca-ccattccaaaaaggttatttcaaagccaaaagttttagaaccttagt 290  Q
    |||| ||||||||||||||||||||| || ||| ||||| |  ||| |||| ||||||||||||||||| ||||    
T  1265469 ttcaacggattcagagggcatcatcacccgttctaaaaacggcattacaaaaccaaaagttttagaaccgtagt 1265396  T

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