View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_low_16 (Length: 457)
Name: NF18786_low_16
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 1649014 - 1648589
Alignment:
| Q |
13 |
atactcagcaaacctcttctttggtgcttgacattgaggacaactatatgtgtccggctgcaataacgtatataatgttcaaatcacaaaagcagtcacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1649014 |
atactcagcaaacctcttctttggtgcttgacattgaggacaactatatgtgtccggctgcaataacgtatataatgttcaaatcacaaaagcagtcacc |
1648915 |
T |
|
| Q |
113 |
acatgttgttaaatccaactttaatctaaaattgtctgtcaataactatgaaacacgtagaatttgacaataatttgaaaaaattgactgaaaccacatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1648914 |
acatgttgttaaatccaactttaatctaaaattgtctgtcaataactatgaaacacgtagaatttgacaataatttgaaaaaattgactgaaaccacatt |
1648815 |
T |
|
| Q |
213 |
cattggtagtgtctgacaccaatacatgtaagacatttnnnnnnnntaatacatgtcggacaccagacatgctttcaatttcaatcaggtgtcatataga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1648814 |
cattggtagtgtctgacaccaatacatgtaagacatttaaaaaaaaaaatacatgtcggacaccagacatgctttcaatttcaatcaggtg-catataga |
1648716 |
T |
|
| Q |
313 |
taaaaaagatgaagtctcttggaaattatttttaagtaaacattttatatatgtgatggacttacctggtcatcaaaagattttggtaagaagtatatgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1648715 |
taaaaaagatgaagtctcttggaaattatttttaagtaaagtttttatatatgtgatggacttacctggtcatcaaaagattttggtaagaagtatatgt |
1648616 |
T |
|
| Q |
413 |
atccgcagtcaaggcaaatgtgagtag |
439 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1648615 |
atccgcagtcaaggcaaatgtgagtag |
1648589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University