View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_17 (Length: 455)

Name: NF18786_low_17
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_17
NF18786_low_17
[»] scaffold0330 (2 HSPs)
scaffold0330 (209-387)||(18467-18645)
scaffold0330 (366-409)||(18268-18311)
[»] scaffold0240 (4 HSPs)
scaffold0240 (209-387)||(2485-2663)
scaffold0240 (131-335)||(15374-15587)
scaffold0240 (2-92)||(15590-15682)
scaffold0240 (366-409)||(2286-2329)
[»] chr6 (1 HSPs)
chr6 (194-307)||(14341912-14342025)
[»] chr2 (3 HSPs)
chr2 (1-123)||(33052977-33053099)
chr2 (4-62)||(280423-280481)
chr2 (3-47)||(32162375-32162419)
[»] chr4 (1 HSPs)
chr4 (50-123)||(24866484-24866557)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-62)||(144314-144375)
scaffold0024 (1-58)||(145353-145410)
[»] chr7 (1 HSPs)
chr7 (2-47)||(11001272-11001317)
[»] chr1 (1 HSPs)
chr1 (1-62)||(40805476-40805537)


Alignment Details
Target: scaffold0330 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 209 - 387
Target Start/End: Complemental strand, 18645 - 18467
Alignment:
Q  209 tgtgtgatagcctccaaattctcctccttttctattgcctcctctattttggttgccaagttatagtcctttttagtaactaaactcgttattttccctt 308  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  18645 tgtgtgatagcctccaaattctcattcttttttattgcctcctctattttggttgccaagctatagtcctttttagtaactaaacttgttattttccctt 18546  T
Q  309 ttgcatccatacgagcagttttacctctagcggccaggtccgtgcaaactaatgtagggaaatcttcgctgttactttt 387  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  18545 ttgcatccatacgtgcagttttacctctagcggccaggtccgtgcaaactaatgttgggaaatcttcgttgtttctttt 18467  T

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Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 18311 - 18268
Alignment:
Q  366 ggaaatcttcgctgttacttttgaacttgttgtgattttcaacc 409  Q
    ||||||||||| || ||||||||||||||||| |||||||||||    
T  18311 ggaaatcttcgttgctacttttgaacttgttgagattttcaacc 18268  T

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Target: scaffold0240 (Bit Score: 143; Significance: 6e-75; HSPs: 4)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 209 - 387
Target Start/End: Complemental strand, 2663 - 2485
Alignment:
Q  209 tgtgtgatagcctccaaattctcctccttttctattgcctcctctattttggttgccaagttatagtcctttttagtaactaaactcgttattttccctt 308  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  2663 tgtgtgatagcctccaaattctcattcttttttattgcctcctctattttggttgccaagctatagtcctttttagtaactaaacttgttattttccctt 2564  T
Q  309 ttgcatccatacgagcagttttacctctagcggccaggtccgtgcaaactaatgtagggaaatcttcgctgttactttt 387  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  2563 ttgcatccatacgtgcagttttacctctagcggccaggtccgtgcaaactaatgttgggaaatcttcgttgtttctttt 2485  T

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Target: scaffold0240; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 131 - 335
Target Start/End: Complemental strand, 15587 - 15374
Alignment:
Q  131 acataagaaatacaagtaacccaataagtgtgaggcattgaatattccagcctagttgcctctattcggacactttcttgtgtgatagcctccaaattct 230  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  15587 acatgagaaacataagtaacccaataagtgtgaggcattgaatattccaacctagttgcctctattcagatactttcttgtgtgatagcctccaaattct 15488  T
Q  231 cctccttttctattgcctcctctattttggttgccaagttatagtcc-----tttttag----taactaaactcgttattttcccttttgcatccatacg 321  Q
    | |  |||| |||||| ||||||||||||||||||||||||||||||     |||||||    ||| |||||| ||||||||||||||||||||||||||    
T  15487 cgttattttttattgcttcctctattttggttgccaagttatagtcctttaatttttagcaactaattaaacttgttattttcccttttgcatccatacg 15388  T
Q  322 agcagttttacctc 335  Q
     | |||||||||||    
T  15387 tgtagttttacctc 15374  T

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Target: scaffold0240; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 15682 - 15590
Alignment:
Q  2 aaagatggttcgctttggaaaatatagcagttgcctttata--ccattaaaggaatgtagtagatgctcttccaccgcgaatatcccacacat 92  Q
    ||||||||| |||||||||||| ||||||| || | |||||  ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  15682 aaagatggtacgctttggaaaacatagcaggtgacattatatgccattgaaggaatgtaatagatgctcttccaccgcgaatatcccacacat 15590  T

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Target: scaffold0240; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 2329 - 2286
Alignment:
Q  366 ggaaatcttcgctgttacttttgaacttgttgtgattttcaacc 409  Q
    ||||||||||| || ||||||||||||||||| |||||||||||    
T  2329 ggaaatcttcgttgctacttttgaacttgttgagattttcaacc 2286  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 14341912 - 14342025
Alignment:
Q  194 attcggacactttcttgtgtgatagcctccaaattctcctccttttctattgcctcctctattttggttgccaagttatagtcctttttagtaactaaac 293  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  14341912 attcggacactttcttttgtgatagcctccaaattctcattcttttttattgcctcctctattttggttgccaagctatagtcctttttagtaaccagac 14342011  T
Q  294 tcgttattttccct 307  Q
    | ||||||||||||    
T  14342012 ttgttattttccct 14342025  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 33053099 - 33052977
Alignment:
Q  1 caaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtagatgctcttccaccgcgaatatcccacacatacacgatt 100  Q
    |||||| |||| ||||| ||||||| ||||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33053099 caaagacggtttgctttcgaaaatacagcagttacctttatgcccttgaaggaatgtagtagatgctcttccaccgcgaatatcccacacatacacgatc 33053000  T
Q  101 ctatgcctcccaacaccataaat 123  Q
    | |||||||| | ||||||||||    
T  33052999 ccatgcctcctagcaccataaat 33052977  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 280423 - 280481
Alignment:
Q  4 agatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtag 62  Q
    |||||||| | ||||||||||||||||||||| ||||| ||||| ||| ||||||||||    
T  280423 agatggtttgatttggaaaatatagcagttgcttttatgccattgaagaaatgtagtag 280481  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 32162375 - 32162419
Alignment:
Q  3 aagatggttcgctttggaaaatatagcagttgcctttataccatt 47  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||    
T  32162375 aagatggtttgctttggaaaatatagtagttgcctttatgccatt 32162419  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 24866557 - 24866484
Alignment:
Q  50 aggaatgtagtagatgctcttccaccgcgaatatcccacacatacacgattctatgcctcccaacaccataaat 123  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||||||||||    
T  24866557 aggaatgcagtagatgctcttccaccacgaatatcccacacatacacgatcccatgcctcccagcaccataaat 24866484  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 144314 - 144375
Alignment:
Q  1 caaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtag 62  Q
    ||||||||||| | |||| ||||||||| |||||||||||| ||||| ||| ||||||||||    
T  144314 caaagatggtttgatttgaaaaatatagtagttgcctttatcccattgaagaaatgtagtag 144375  T

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Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 145410 - 145353
Alignment:
Q  1 caaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgta 58  Q
    |||| |||||| | |||| |||||||||||||||||||||| ||||||||| ||||||    
T  145410 caaatatggtttgatttgaaaaatatagcagttgcctttatcccattaaagaaatgta 145353  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 11001272 - 11001317
Alignment:
Q  2 aaagatggttcgctttggaaaatatagcagttgcctttataccatt 47  Q
    |||||||||| | ||||||||||||| ||||||||||||| |||||    
T  11001272 aaagatggtttgttttggaaaatataacagttgcctttatgccatt 11001317  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 40805537 - 40805476
Alignment:
Q  1 caaagatggttcgctttggaaaatatagcagttgcctttataccattaaaggaatgtagtag 62  Q
    |||||||| || | |||||| ||||||||||||| |||||| ||||| ||| ||||||||||    
T  40805537 caaagatgatttgatttggagaatatagcagttgtctttatcccattgaagaaatgtagtag 40805476  T

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