View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_low_2 (Length: 814)
Name: NF18786_low_2
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 359 - 800
Target Start/End: Complemental strand, 46290184 - 46289745
Alignment:
| Q |
359 |
gccaagtcacaatctatgacaaaagcactacactgctgtaagtaaaacaatatagaatagatggcatttgcttttaagcaacaaagagataatgaataaa |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46290184 |
gccaagtcacaatctatgacaaaagcactacactgctgtaagtaaaacaatatagaatagatggcatttgcttttaagcaacaaagagataatgaataaa |
46290085 |
T |
|
| Q |
459 |
caatgcatcagatgcaaaataataagtgttggaaacatggacatgtaatatcaaatttccgacacaacagtacatacattggggatgattgacaatagca |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46290084 |
caatgcatcagatgcaaaataataagtgttggaaacatggacatgtaatatcaaatttccgacacaacagtacatacattggggatgattgacaatagca |
46289985 |
T |
|
| Q |
559 |
acaaatttcatatacttacaaaagataacaatttcatgagaaattcatgctttcgatggatcaaaacaaactataactaattatcatgtatataaccatt |
658 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
46289984 |
acaaatttcatatacttacaaaa-ataacaatttcatgagaaattcatgctttcgatggatcaaaa-aaactataactaattatcatgaatataaccatt |
46289887 |
T |
|
| Q |
659 |
gcatgccaaaaatttaaaaattcaaacaaggaaagaagacatttttagagaatatttgaacatatctcgtaaaataagcattaatgttagagtaatgtga |
758 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289886 |
gcatgccaaaaatttaaaaattcaaacaaggaaagaagacatttttagagaatatttgaacatatctcgtaaaataagcattaatgttagagtaatgtga |
46289787 |
T |
|
| Q |
759 |
acttgtatgatggtatattggtactgattatgaaatattcat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289786 |
acttgtatgatggtatattggtactgattatgaaatattcat |
46289745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 6 - 315
Target Start/End: Complemental strand, 46290534 - 46290228
Alignment:
| Q |
6 |
atcacaaactactaggatcctaacatagttcaggccaaattacttcgggattacaaacttgaaaaatattttgattaatatttctcacacaagagtaagt |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46290534 |
atcacaaactaccaggatcctaacatagttcaggccaaattacttcggaattacaaacttgaaaaatattttgattaatatttctcacacaagagtaagt |
46290435 |
T |
|
| Q |
106 |
ctatatacatctattcttcttcnnnnnnntccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataagaaaaatgtgcctacatga |
205 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46290434 |
ctatatacatctatt---cttcaaaaaaatccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataagaaaaatgtgcctacatga |
46290338 |
T |
|
| Q |
206 |
aaaatttactaaactgaatcattaagaaaacatnnnnnnnntatcgacattaacagtgatgaacttacccgacggtcaaagaacctaatggccctcggat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46290337 |
aaaatttactaaactgaatcattaagaaaacataaaaaaaatatcgacattaacagtgatgaacttacccgacggtcaaagaacctaatggccctcggat |
46290238 |
T |
|
| Q |
306 |
cctgtaacac |
315 |
Q |
| |
|
|||||||||| |
|
|
| T |
46290237 |
cctgtaacac |
46290228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University