View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_low_21 (Length: 408)
Name: NF18786_low_21
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 38292705 - 38293082
Alignment:
| Q |
18 |
attatgaaatagcttccaagaaaaaaccaaaaccttactattttgtttgtagaccatccctaagtaacttttcgttactccatttgtaccaaataaaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38292705 |
attatgaaatagcttccaagaaaaaaccaaaaccttactattttgtttgtagaccatccctaagtaacttttcgttactccatttgtaccaaataaaaca |
38292804 |
T |
|
| Q |
118 |
ggttaaccactttttgtcactttcatgtttaaccatgacataaatactcatattcatatacgaatttgagccactttnnnnnnnnnnttccctggtattt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| |
|
|
| T |
38292805 |
ggttaaccactttttgtcactttcatgtttaaccatgacataaatactcatattcatatacgaaattgagccacttt-aaaaacaaattccctggtcttt |
38292903 |
T |
|
| Q |
218 |
tttctgttcaaattgatacctataaaatcaattttacgaaagtnnnnnnntatggccaagcctaagtaatgtgacccatgaaagtgacctatccatgcct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38292904 |
tttctgttcaaattgatacctataaaatcaattttacgaaagtaaaaaaatatggccaagcctaagtaatgtgacccatgaaagtgacctatccatgcct |
38293003 |
T |
|
| Q |
318 |
taaatttggggggctggaggcatcccgagtgtgtcgacatctcaatgaacctaacaaataacctgctctcttcaatatt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38293004 |
taaatttggggggctggaggcatcccgagtgtgtcgacatctcaatgaacctaacaaataacctgctctcttcaatatt |
38293082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University