View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_22 (Length: 404)
Name: NF18786_low_22
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 33841190 - 33840799
Alignment:
| Q |
1 |
aaatattaaaatattacgtgtacctgaaatttataaataaaattgaaattttaggtacaatatgatttcttttaatctcataaacattgcttgatttaaa |
100 |
Q |
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| T |
33841190 |
aaatattaaaatattacgtgtacctgaaatttataaataaaattgaaattttaggtacaatatgatttcttttaatctcataaacattgcttgatttaaa |
33841091 |
T |
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| Q |
101 |
gtaagaagtcaatatacattaaactcgtatcaaatcaaaatatgagtatatgttatacactcaaaatcttgatagagtggagggaaaagatgaaactata |
200 |
Q |
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| T |
33841090 |
gtaagaagtcaatatacattaaactcgtatcaaatcaaaatatgagtatatgttatacactcaaaatcttgatagagtggagggaaaagatgaaactata |
33840991 |
T |
|
| Q |
201 |
gaccaatcaatagatataaaatgatatatggtatttcttatctgtaagacttgagaattgctccacaaaaagtgcataaaatagctttccaagatttaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33840990 |
gaccaatcaatagatataaaatgatatatggtatttcttatctgtaagacttgagaattgctccacaaaaagtgcataaaatagctttccaagatttaca |
33840891 |
T |
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| Q |
301 |
atagaaaggaacataacaaaatcttgtttgtgtaatcatatcagctacactggcaccactgcgacaccgtgaacacgttccggccacaggtt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
33840890 |
atagaaaggaacataacaaaatcttgtttgtgtaatcatatcagctacactggcaccactgcgacaccgtgaacacgttcccgccaccggtt |
33840799 |
T |
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