View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_23 (Length: 403)
Name: NF18786_low_23
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 108 - 388
Target Start/End: Original strand, 19187940 - 19188214
Alignment:
| Q |
108 |
gtttttgaggaagatacatatggtgaagaagttggtgcggatgccacgtatgaaaaccctcattcacatgtacaaaatatagatcgacccagtgaggaaa |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
19187940 |
gtttttgaggaagatacgtatggtgaagaagttggtgcagattccacgtatgaaaaccctcattcacatgtataaaatatagatcgacccagtgaagaaa |
19188039 |
T |
|
| Q |
208 |
aaactaaatttatcgaataaacttttgcgatacgtgtaccaatacatgttgtgctagaattaaaatgttttatttgtttttccttctcgagcatggatcc |
307 |
Q |
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| T |
19188040 |
at-ctaaatttatcgaag---cttttgcgatacgtgtaccaatacatgttgtgctagaattaaaaaaatttatttgtttttccttctcgagcatggatcc |
19188135 |
T |
|
| Q |
308 |
catgggacgacattgaatgtaatagacatatgactggatttattatgtgtttagaggaaatatggatattctagaatattt |
388 |
Q |
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| T |
19188136 |
catgggacgacattgaatgtaatagacatatgactggatttatca--tgtttagaggaaatatggatattctagaatattt |
19188214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 16007115 - 16007340
Alignment:
| Q |
4 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgttttgcctaagaaaccagcatactatggtagaac |
103 |
Q |
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||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
16007115 |
atgcagatgatcgccccaccatgtccaatgttatagcaatgttaactaacaaaattaaagtcgatgttttgcctaagaaaccggcatactatggtagaac |
16007214 |
T |
|
| Q |
104 |
aagagtttttgaggaagatacatatggtgaagaagttggtgcggatgccacgtatgaaaaccctcattcacatgtacaaaatatagatcgacccagtgag |
203 |
Q |
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| T |
16007215 |
aagagtttttgaggaagaaacatatggcgaagatgttggtgtggattccacatatgaaaactctcattcacatgagcaaagtatagatagatccagtgaa |
16007314 |
T |
|
| Q |
204 |
gaaaaaactaaatttatcgaataaac |
229 |
Q |
| |
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||||| || ||||||||||| ||||| |
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| T |
16007315 |
gaaaatacaaaatttatcgattaaac |
16007340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 15963274 - 15963042
Alignment:
| Q |
4 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgttttgcctaagaaaccagcatactatggtagaac |
103 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||| |||| |
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| T |
15963274 |
atgcggatgatcgtcccaccatgtccaatgttatagcaatgttaactaacaaaataaaagtggatattttgcctaagaaaccagcatactacggtggaac |
15963175 |
T |
|
| Q |
104 |
aagagtttttgaggaagatacatatggtgaagaagttggtgcggatgccacgtatgaaaaccctcattcacatgtacaaaatatagatcgacccagtgag |
203 |
Q |
| |
|
|||||||||||||||||| || || || ||||| || | || ||| |||||||||||||| || ||||||||||||||||||||||| | |||| || |
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| T |
15963174 |
aagagtttttgaggaagaaacttacggcgaagatgtggatgtagattccacgtatgaaaactcttattcacatgtacaaaatatagatagttccagcgaa |
15963075 |
T |
|
| Q |
204 |
gaaaaaactaaatttatcgaataaacttttgcg |
236 |
Q |
| |
|
|||| |||||||| ||| ||||||| |||||| |
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| T |
15963074 |
gaaatcactaaattaatctaataaacatttgcg |
15963042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 15981638 - 15981460
Alignment:
| Q |
4 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgttttgcctaagaaaccagcatactatggtagaac |
103 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15981638 |
atgcagatgatcgccccaccatatccaatgttatagcaatgttaactaacaaaattaaagtcgatgttttgcctaagaaaccagcatactatggtagaac |
15981539 |
T |
|
| Q |
104 |
aagagtttttgaggaagatacatatggtgaagaagttggtgcggatgccacgtatgaaaaccctcattcacatgtacaa |
182 |
Q |
| |
|
||| |||||||| ||||| || ||||| ||||||||||||| |||| |||| |||||||| || |||||||||||||| |
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| T |
15981538 |
aagggtttttgatgaagaaacgtatggcgaagaagttggtgtggattccacacatgaaaactctgattcacatgtacaa |
15981460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 19148659 - 19148481
Alignment:
| Q |
4 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgttttgcctaagaaaccagcatactatggtagaac |
103 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19148659 |
atgcagatgatcgtccgacaatgtccaatgttatatcaatgttaactaacaaaattaaagtggatgttttgcctaagaaaccagcatactatggtggaac |
19148560 |
T |
|
| Q |
104 |
aagagtttttgaggaagatacatatggtgaagaagttggtgcggatgccacgtatgaaaaccctcattcacatgtacaa |
182 |
Q |
| |
|
|||||||||||| ||||| || || | ||||||||||||| |||| ||| |||||||| ||||||||||||||||| |
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|
| T |
19148559 |
aagagtttttgatgaagaaacgtactgcgaagaagttggtgtggattacacacatgaaaactctcattcacatgtacaa |
19148481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 15955585 - 15955750
Alignment:
| Q |
4 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgttttgcctaagaaaccagcatactatggtagaac |
103 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
15955585 |
atgcagatgatcgccccaccatgtccaatgttatatcaatattaacaaacaaaattaaagtcgatgtttttcctaagaaaccagcatactatggtggaac |
15955684 |
T |
|
| Q |
104 |
aagagtttttgaggaagatacatatggtgaagaagttggtgcggatgccacgtatgaaaaccctca |
169 |
Q |
| |
|
|||||||||||| ||||| || ||||| |||||||| |||| |||| |||||| ||||||| |||| |
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| T |
15955685 |
aagagtttttgatgaagaaacgtatggcgaagaagtgggtgtggattccacgtgtgaaaactctca |
15955750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 19270293 - 19270167
Alignment:
| Q |
4 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgttttgcctaagaaaccagcatactatggtagaac |
103 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||||| ||||||||| |||||| |||||||||||||| |||||||||||| || | |||| |
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|
| T |
19270293 |
atgcagatgatcgttccaccatgtccaatgttatatgaatgttggcaaacaaaactaaagtcgatgttttgcctaataaaccagcatacaatattggaac |
19270194 |
T |
|
| Q |
104 |
aagagtttttgaggaagatacatatgg |
130 |
Q |
| |
|
|||||||||||||||||| || ||||| |
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|
| T |
19270193 |
aagagtttttgaggaagaaacgtatgg |
19270167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 19187875 - 19187944
Alignment:
| Q |
4 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgtttt |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19187875 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgtttt |
19187944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 388
Target Start/End: Original strand, 16007366 - 16007476
Alignment:
| Q |
276 |
tttatttgtttttccttctcgagcatggatcccatgggacgacattgaatgtaatagacatatgactggatttattatgtgtttagaggaaatatggata |
375 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| || ||||| ||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| ||||| |
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| T |
16007366 |
tttatttgttttgccttctcgagcattgattccttgggaagacattgaatgtattagacatatgagtggatttatca--tgtttagaggaaatagggata |
16007463 |
T |
|
| Q |
376 |
ttctagaatattt |
388 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
16007464 |
ttctagaaaattt |
16007476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 15943785 - 15943886
Alignment:
| Q |
4 |
atgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaaattaaagtggatgttttgcctaagaaaccagcatactatggtagaac |
103 |
Q |
| |
|
|||| |||||||| |||| ||||| ||||||||||||||||||||||| |||| || |||| |||||| |||||||| || ||||||||||||||||| |
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|
| T |
15943785 |
atgccgatgatcgccccaacatgtcgaatgttatatcaatgttaacaaataaaagtagagtgactgtttttcctaagaagccggcatactatggtagaac |
15943884 |
T |
|
| Q |
104 |
aa |
105 |
Q |
| |
|
|| |
|
|
| T |
15943885 |
aa |
15943886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 15963034 - 15962968
Alignment:
| Q |
262 |
tagaattaaaatgttttatttgtttttccttctcgagcatggatcccatgggacgacattgaatgta |
328 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| | |||||| ||||| ||||||||||||| |
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|
| T |
15963034 |
tagaattaaaatgttttatttgttttgccttcccgagtgttgatcccttgggaagacattgaatgta |
15962968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19581661 - 19581716
Alignment:
| Q |
1 |
aatatgcagatgatcgtcccaccatgtgcaatgttatatcaatgttaacaaacaaa |
56 |
Q |
| |
|
|||||||| ||||||| || || |||| | |||||||||||||||||||||||||| |
|
|
| T |
19581661 |
aatatgcaaatgatcgacctacaatgtccgatgttatatcaatgttaacaaacaaa |
19581716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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