View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_low_24 (Length: 395)
Name: NF18786_low_24
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 46723734 - 46724106
Alignment:
| Q |
1 |
tgaaatatctgcaaagagtaactataatttcgagaaacctttcttataccttgccaagaaacttgcagggtaagtaactaattgaatacactctattcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46723734 |
tgaaatatctgcaaagagtaactataatttcgagaaacctttcttataccttgccaagaaacttgcagggtaagtaactaattgaatatactctattcat |
46723833 |
T |
|
| Q |
101 |
tctttgatatatatgccaatgtcatgattgatgaatggtagcaaattatttactgattcgtgttatgattccaatttccagtaatatgaaccttcacttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46723834 |
tctttgatatatatgccaatgtcatgattgatgaatggtagcaaattatttactgattcgtgttatgattccaatttccagtaatatgaaccttcacttt |
46723933 |
T |
|
| Q |
201 |
gtggaaatgcctgctcttgctcctcctgaagtcgcctttgatatagctgcgcaagaatcgtaaagacttctgttatctatgtgtttttatctgcatttag |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
46723934 |
gtggagatgcctgctcttgctcctcctgaagtcgcctttgatatagctgcgcaagaatcgtaaggact---------tatgtgtttttatctgcattttg |
46724024 |
T |
|
| Q |
301 |
gctattttgttcttccctaattactttgttactgatttgattttgtgtattgatttatattctttacaggattgaacaagaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46724025 |
gctattttgttcttccctaattactttgttactgatttgattttgtgtattgatttatattctttacaggattgaacaagaa |
46724106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 49685345 - 49685287
Alignment:
| Q |
14 |
aagagtaactataatttcgagaaacctttcttataccttgccaagaaacttgcagggta |
72 |
Q |
| |
|
||||| |||||||| || ||||| |||||| | |||||||||| ||||||||||||||| |
|
|
| T |
49685345 |
aagagcaactataactttgagaagcctttcctttaccttgccaggaaacttgcagggta |
49685287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 49690711 - 49690653
Alignment:
| Q |
14 |
aagagtaactataatttcgagaaacctttcttataccttgccaagaaacttgcagggta |
72 |
Q |
| |
|
||||| |||||||| || ||||| |||||| | |||||||||| ||||||||||||||| |
|
|
| T |
49690711 |
aagagcaactataactttgagaagcctttcctttaccttgccaggaaacttgcagggta |
49690653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 49695541 - 49695483
Alignment:
| Q |
14 |
aagagtaactataatttcgagaaacctttcttataccttgccaagaaacttgcagggta |
72 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
49695541 |
aagagcaactataactttgagaagcctttcttgtacctagccaggaaacttgcagggta |
49695483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University