View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_27 (Length: 375)
Name: NF18786_low_27
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 168 - 323
Target Start/End: Complemental strand, 48867365 - 48867210
Alignment:
| Q |
168 |
aagtagatccatatgtagaagctagtgaactctttgaaatgagcacattattgataggtagcacaggaaggatactgtacaagttaggcccaaattatgt |
267 |
Q |
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| T |
48867365 |
aagtagatccatatgtagaagctagtgaactctttgaaatgagcaccttattgataggtagcacaggaaggatactgtacaagttaggcccaaattatgt |
48867266 |
T |
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| Q |
268 |
tataatgtgtgatgtatttaaatagataagaatgagagaacatttcattcggtttg |
323 |
Q |
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| T |
48867265 |
tataatgtgtgatgtatttaaatagataagaatgagagaacatttcattcggtttg |
48867210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 48868490 - 48868427
Alignment:
| Q |
91 |
tataacgtagaccacggtgaccatttgtcacctacaatcatttcaattattcttgcgttgctta |
154 |
Q |
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| T |
48868490 |
tataacgtagaccacggtgaccatttgtcacctacaatcatttcaattattcttgtgttgctta |
48868427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 48879727 - 48879654
Alignment:
| Q |
250 |
gttaggcccaaattatgttataatgtgtgatgtatttaaatagataagaatgagagaacatttcattcggtttg |
323 |
Q |
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| T |
48879727 |
gttaggcccaaattaagttagtatgtgtgatgtatttaaatagataagaatgagagaacatctcattcagtttg |
48879654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 48879836 - 48879777
Alignment:
| Q |
171 |
tagatccatatgtagaagctagtgaactctttgaaatgagcacattattgataggtagca |
230 |
Q |
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| T |
48879836 |
tagatccatgtgtagaagctagtgaactctttgaaatgagcacattatagataggtagca |
48879777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 48867168 - 48867130
Alignment:
| Q |
319 |
gtttgtaattgtctatttcctgtaactgcctctcagttg |
357 |
Q |
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| T |
48867168 |
gtttgtaattgtctatttcctgtaactgcctctcagttg |
48867130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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