View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_28 (Length: 373)

Name: NF18786_low_28
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_28
NF18786_low_28
[»] chr2 (13 HSPs)
chr2 (135-289)||(28215414-28215568)
chr2 (135-355)||(28220654-28220885)
chr2 (1-91)||(28215611-28215701)
chr2 (1-88)||(32565382-32565469)
chr2 (1-88)||(32806567-32806654)
chr2 (1-88)||(32309366-32309453)
chr2 (1-88)||(32815004-32815091)
chr2 (1-91)||(28220523-28220610)
chr2 (247-355)||(32565160-32565272)
chr2 (247-355)||(32309562-32309674)
chr2 (247-355)||(32814783-32814895)
chr2 (1-61)||(32799640-32799700)
chr2 (47-88)||(32305344-32305385)
[»] chr6 (1 HSPs)
chr6 (2-85)||(301513-301596)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 135 - 289
Target Start/End: Complemental strand, 28215568 - 28215414
Alignment:
Q  135 aatcatatagattgcttgcaatccaagatcatgaatttgattggttatgaaatagtgaataccaatagatatcctaaattttttgtgttctatttcttgt 234  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28215568 aatcataaagactgcttgcaatccaagatcatgaatttgattggttatgaaatagtgaataccaataaatatcctaaattttttgtgttctatttcttgt 28215469  T
Q  235 tggttttctttgctaaattatcttcttgctttgataatggtattgattttctgtt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215468 tggttttctttgctaaattatcttcttgctttgataatggtattgattttctgtt 28215414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 135 - 355
Target Start/End: Original strand, 28220654 - 28220885
Alignment:
Q  135 aatcatatagattgcttgcaatccaagatcatgaatttga-ttggttatgaaatagtgaataccaatagatatcctaaattttttgtgttctatttcttg 233  Q
    ||||||| ||||| |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||    
T  28220654 aatcataaagattacttgcaatccaagatcatgaattttaattggttatgaaatagtgaatactaatagatatcctaaattttttgtgttctgattcttg 28220753  T
Q  234 ttggttttctttgctaaattatcttcttgctttgataatggtattgattttctgtt----------ctacttgtggtgttactgaatcagggttgtgatg 323  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||          |||||||||||||| |||||||||||||||||||    
T  28220754 ttggttttctttgctaaattattttcttgctttgatattggtattcattttctgttctaagtctaactacttgtggtgttgctgaatcagggttgtgatg 28220853  T
Q  324 cttccatgctgttggaggacaatggtgataga 355  Q
    ||||| || |||||||||||||||||||||||    
T  28220854 cttccttgttgttggaggacaatggtgataga 28220885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28215701 - 28215611
Alignment:
Q  1 gttccactgttaccgatatttactgtaatcatagagaccttgcaccttctcttctttgtctcttctttcatgattgcttcatccaggttcc 91  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28215701 gttccgctgttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggttcc 28215611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32565469 - 32565382
Alignment:
Q  1 gttccactgttaccgatatttactgtaatcatagagaccttgcaccttctcttctttgtctcttctttcatgattgcttcatccaggt 88  Q
    ||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32565469 gttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt 32565382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32806654 - 32806567
Alignment:
Q  1 gttccactgttaccgatatttactgtaatcatagagaccttgcaccttctcttctttgtctcttctttcatgattgcttcatccaggt 88  Q
    ||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32806654 gttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt 32806567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32309366 - 32309453
Alignment:
Q  1 gttccactgttaccgatatttactgtaatcatagagaccttgcaccttctcttctttgtctcttctttcatgattgcttcatccaggt 88  Q
    ||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  32309366 gttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggt 32309453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32815091 - 32815004
Alignment:
Q  1 gttccactgttaccgatatttactgtaatcatagagaccttgcaccttctcttctttgtctcttctttcatgattgcttcatccaggt 88  Q
    ||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  32815091 gttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggt 32815004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 28220523 - 28220610
Alignment:
Q  1 gttccactgttaccgatatttactgtaatcatagagaccttgcaccttctcttctttgtctcttctttcatgattgcttcatccaggttcc 91  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  28220523 gttccgctgttaccgatatttactttaatcatagagacc-tgcaccttctcttcttcgtctct--tttcatgattgcttcatccaggttcc 28220610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 355
Target Start/End: Complemental strand, 32565272 - 32565160
Alignment:
Q  247 ctaaattatcttcttgctttgataatggtattgattttctgttcta----cttgtggtgttactgaatcagggttgtgatgcttccatgctgttggagga 342  Q
    |||||| ||||||||| ||| |||||||| ||||||| ||||||||    ||||||||||| || ||||||||||||||||||||| |||| ||||| ||    
T  32565272 ctaaatcatcttcttgatttcataatggttttgatttgctgttctaactacttgtggtgtttctaaatcagggttgtgatgcttccttgctattggaaga 32565173  T
Q  343 caatggtgataga 355  Q
    |||||||||||||    
T  32565172 caatggtgataga 32565160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 32309562 - 32309674
Alignment:
Q  247 ctaaattatcttcttgctttgataatggtattgattttctgttcta----cttgtggtgttactgaatcagggttgtgatgcttccatgctgttggagga 342  Q
    |||||| ||||||||||||| |||||||| |||||||  |||||||    |||||||||||||  |||||||| |||||||||||| |||| ||||| ||    
T  32309562 ctaaatcatcttcttgctttcataatggttttgatttgttgttctaactacttgtggtgttacgaaatcagggatgtgatgcttccttgctattggaaga 32309661  T
Q  343 caatggtgataga 355  Q
    |||||||||||||    
T  32309662 caatggtgataga 32309674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 355
Target Start/End: Complemental strand, 32814895 - 32814783
Alignment:
Q  247 ctaaattatcttcttgctttgataatggtattgattttctgttcta----cttgtggtgttactgaatcagggttgtgatgcttccatgctgttggagga 342  Q
    |||||| ||||||||| ||| |||||||| ||||||| ||||||||    |||||||||||||  |||||||| |||||||||||| |||| ||||| ||    
T  32814895 ctaaatcatcttcttgatttcataatggttttgatttgctgttctaactacttgtggtgttacgaaatcagggatgtgatgcttccttgctattggaaga 32814796  T
Q  343 caatggtgataga 355  Q
    |||||||||||||    
T  32814795 caatggtgataga 32814783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32799700 - 32799640
Alignment:
Q  1 gttccactgttaccgatatttactgtaatcatagagaccttgcaccttctcttctttgtct 61  Q
    ||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||| ||||    
T  32799700 gttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtct 32799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 32305344 - 32305385
Alignment:
Q  47 ttctcttctttgtctcttctttcatgattgcttcatccaggt 88  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  32305344 ttctcttcttcgtctcttctttcatgattgcttcatccaggt 32305385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 301513 - 301596
Alignment:
Q  2 ttccactgttaccgatatttactgtaatcatagagaccttgcaccttctcttctttgtctcttctttcatgattgcttcatcca 85  Q
    |||| ||||||||||||| |||  | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  301513 ttccgctgttaccgatatctaccttgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatcca 301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University